Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0486 ATGTCCAACCATCCTCATCACTACTTGCCCTCCCCTGCTCTCTCTCTCAGCCTTGCGGGAATCTTTCGCCTTGATGATGGAGTAGCGAAGTCGAGCAACGCTGAGATGGAAGAAGCCGACGGGGAGGAGGGAAGAGGAGGAGGCGAGCGGCGAGACAGCACTGTTCATCACGAGATTAGCAGCGAGAACTCTGGTGGGCTGATCGGGAGATCGTCGAGATCCGACGATGGCTTCGAAGAAGGCCATGACGATGTTGAAGGTGACGGAGACAAGAACAAGAGAAAGAAACAGAGGAAGAGATATCATAGGCACACTGCTGAGCAGATCAGAGAAATGGAAGGACTTTTCAGAGAGTCGCCACATCCTGATGAGAACCAGAGACAACAACTTAGCAAGCAATTAGGCCTTGCTCCTAGGCAAGTCAAGTTCTGGTTCCAAAATCGTCGAACCCAAATCAAGGCTATACAAGAGCGTCATGAGAATCTATTGCTAAAGTCAGAAATGGATAAACTTAGAGAGGAAAATGAAGCCTTGAGAGGGATCATAAACAAAGCTTGTTGCTCCAACTGTGGAGTCGCCACCATTTCCTCAGATTCCCCCATGCCTCCTCAACTACACCAACTCCGTCTAGAAAATGCCAAACTCAAATCTGAGATTGAGAAGCTTCGAACAGCAGTAGCGAAGGGCCCACCGGGGGACCAAACTCCACTTACTCAGTGGCACGTGAGAACTGGAGGTGAGCACGTGCAGTCTATCGTCAACTTGTCCAAAGGGAAACATGGAGGCAACGCCGTAACCATCCAGAACCCAGAGAGAAAAAACGAAGAAATAATAGCAACCATGGCTTCTCTGGCAACCTTAGCTTCCGTCCAACCGGCTTCCGTCAAGGGCCTCGCTGGAAGCTCTCTTTCCGGAACTAAGCTCTCTATCAAGCCCTCTCACCAGAGTCTTAGACCCAGAAATTTCAGGAGCGGAGCTGTGGTGGCCAAGTATGGTGACAAGAGTGTATACTTTGATTTAGAGGATATTGGCAACACTACTGGGCAGTGGGATTTGTATGGATCGGATGCACCTTCTCCTTACAACCCTCTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCATTCACAAAGAGGGGATTGTTGCTCAAGTTCTTGATATTGGGAGGTGGCTCTACTCTCGCCTACTTCAGTGCCACTGCCACGGGCGATGTTCTTCCAATCAAGAAGGGCCCACAACTTCCACCTAAGCCCGGTCCACGTGGCAAGATCTAA 1275 0.4996 MSNHPHHYLPSPALSLSLAGIFRLDDGVAKSSNAEMEEADGEEGRGGGERRDSTVHHEISSENSGGLIGRSSRSDDGFEEGHDDVEGDGDKNKRKKQRKRYHRHTAEQIREMEGLFRESPHPDENQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENLLLKSEMDKLREENEALRGIINKACCSNCGVATISSDSPMPPQLHQLRLENAKLKSEIEKLRTAVAKGPPGDQTPLTQWHVRTGGEHVQSIVNLSKGKHGGNAVTIQNPERKNEEIIATMASLATLASVQPASVKGLAGSSLSGTKLSIKPSHQSLRPRNFRSGAVVAKYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATATGDVLPIKKGPQLPPKPGPRGKI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0486 424 Coils Coil 154 181 - -
Lele44g0486 424 SMART HOX_1 96 159 IPR001356 GO:0003677
Lele44g0486 424 MobiDBLite consensus disorder prediction 32 58 - -
Lele44g0486 424 Pfam Homeodomain 98 153 IPR001356 GO:0003677
Lele44g0486 424 SUPERFAMILY Homeodomain-like 87 156 IPR009057 -
Lele44g0486 424 PRINTS Lambda-repressor HTH signature 126 135 IPR000047 GO:0003677
Lele44g0486 424 PRINTS Lambda-repressor HTH signature 135 151 IPR000047 GO:0003677
Lele44g0486 424 Pfam Photosystem I reaction centre subunit VI 288 424 IPR004928 GO:0009522|GO:0009538|GO:0015979
Lele44g0486 424 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-2, CHLOROPLASTIC 281 424 IPR004928 GO:0009522|GO:0009538|GO:0015979
Lele44g0486 424 FunFam Homeobox-leucine zipper protein HDG1 85 171 - -
Lele44g0486 424 Gene3D - 378 400 - -
Lele44g0486 424 Coils Coil 205 225 - -
Lele44g0486 424 CDD homeodomain 102 153 IPR001356 GO:0003677
Lele44g0486 424 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Lele44g0486 424 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Lele44g0486 424 MobiDBLite consensus disorder prediction 32 108 - -
Lele44g0486 424 FunFam Photosystem I reaction center subunit VI 378 400 - -
Lele44g0486 424 MobiDBLite consensus disorder prediction 73 93 - -
Lele44g0486 424 Gene3D - 84 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0486 Lele-ChrLele44 3745120 3752653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0486 89 230 Homeobox Transcription Factor Family AT1G79840 63.889 9.15e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele44g0486 PSI_PsaH 6.9e-71 No_clan