Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0462 ATGTCTTCTCGCAGACAAATTGCTGCCATGAAACAATCCCTCTTTGATCAGGGATATCTGGATGAACAGTTCATTCAGCTTGAGGAGCTGCAGGATGATGCAAATCCGAACTTCGTTGAAGAAATTGTAACTCTTCATTACCGCGATTCTTCAAAATTTATATCAAACATAGAACAAGCGTTGGAAAGGAACCCACTGGAATTTAACAGGCTAGACTCTATGATGCATCAGTTCAAAGGAAGCAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCAGAGAGCACTCTGTTTAGGGAATATTGCAGGGCTAGAAATGCTGAGGGATGCAAGAGGAGCTTCCAACAACTGAAGACAGAATATGCCACACTGAGAAAGAAGCTTGAAGCTTATTTTCAGCAAGGCAAGCTGGGCCCTTTGAAGCAGCATGTCGCCCCAAATTCACCTCAGAAGAAAAAGAAGCAAAGGAAATGCTCTAGTGGGTTTAGGAATACTTTGCTTCCAAATGTCAGTTTTGTTTTCAAAGTTGAATAGGGCAATCTTAACCACTGGCCTTTTCCACTGCCACTGGACCGCTGCTCTGATTTGTTGCCTTGCCGTTGGCTATGTAATTTATTCTCACAGAATTACCTTCTTGGAGCTTTCAAGCCAGCGTGTAACATCTTAATTACATTCAATGATGGGAAAAGTCGAAAGCAGGTTCCATTTAAAAAAGAGAGTGGCCAAACAGTCACTGCCCCACTTTTCCAAAGTCAAGAAAACATTGCTGGGAAGATTATAATCGAGCCAATGCAAGGGAAAAAGATTGACCACAATGGCATAAAAGTCGAATTACTCGGACAGATAGAGATGTATTTTGACAGAGGAAACTTCTATGACTTTACTTCCCTTGTTAGGAAGGAGGACTTTATTCTAGTTGGCATTTCATCTGTAATTCATCTTGAAGTACGAGAACTAGATGTTCCTGGAGATATTTATGAGAAGAAAACTTATCCATTTGAGTTTTCCACAGTTGAAATGCCATATGAGACATATAATGGGGTAAATGTCAGGCTTAGGTATGTTTTGAAAGTGACCATCAGTCGTGGTTATGCAGGAAGTATAATCGAGTACCAGGATTTTGTGGTCCGCAACTATTCTCCACCTCCATCAATTAACAATAGCATTAAGATGGAAGTTGGAATTGAAGATTGCCTACACATTGAATTTGAATATAACAAAAGCAAGTATCATCTGAAAGATGTCATCATTGGGAAGATATATTTTCTCCTGGTAAGAATCAAGATAAAAAATATGGACCTTGAGATTAGGCGTCGCGAATCAACAGGTTCAGGTACCAACACCCATGTGGAGACCGAAACATTGGCAAAATTTGAGTTGATGGATGGTGCTCCTGTCCGAGGTGAGTCTATACCAATCAGACTGTTCCTCAGTCCCTACGAGTTGACCCCAACTCATCGCAACATTAATAACAAATTTAGTGTGAAATACTTTTTAAATCTGGTGTTGGTTGATGAAGAGGACAGGCGATACTTTAAGCAGCAGGAAATCACAATGTATAGGCTACAAGAAGAAACTTCCTGA 1581 0.4054 MSSRRQIAAMKQSLFDQGYLDEQFIQLEELQDDANPNFVEEIVTLHYRDSSKFISNIEQALERNPLEFNRLDSMMHQFKGSSSSIGAKKVKAESTLFREYCRARNAEGCKRSFQQLKTEYATLRKKLEAYFQQGKLGPLKQHVAPNSPQKKKKQRKCSSGFRNTLLPNVSFVFKVEXGNLNHWPFPLPLDRCSDLLPCRWLCNLFSQNYLLGAFKPACNILITFNDGKSRKQVPFKKESGQTVTAPLFQSQENIAGKIIIEPMQGKKIDHNGIKVELLGQIEMYFDRGNFYDFTSLVRKEDFILVGISSVIHLEVRELDVPGDIYEKKTYPFEFSTVEMPYETYNGVNVRLRYVLKVTISRGYAGSIIEYQDFVVRNYSPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGTNTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPTHRNINNKFSVKYFLNLVLVDEEDRRYFKQQEITMYRLQEETS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0462 526 Gene3D - 206 379 IPR014752 -
Lele44g0462 526 PANTHER VACUOLAR PROTEIN SORTING 26 RELATED 212 523 IPR028934 GO:0006886
Lele44g0462 526 Coils Coil 113 133 - -
Lele44g0462 526 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 5 133 IPR036641 GO:0000160
Lele44g0462 526 Pfam Vacuolar protein sorting-associated protein 26 214 507 IPR028934 GO:0006886
Lele44g0462 526 FunFam Vacuolar protein sorting-associated protein 26 381 526 - -
Lele44g0462 526 Gene3D - 381 526 IPR014752 -
Lele44g0462 526 Pfam Hpt domain 48 124 IPR008207 GO:0000160
Lele44g0462 526 Gene3D HPT domain 1 137 IPR036641 GO:0000160
Lele44g0462 526 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 35 130 IPR008207 GO:0000160
Lele44g0462 526 FunFam Histidine-containing phosphotransfer protein 4 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0462 Lele-ChrLele44 3488295 3496404 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g0462 44 3488295 3496404 Lele37g0369 37 3096706 3103461 CCT
Lele44g0462 44 3488295 3496404 Lele38g0346 38 2802942 2812573 CCT
Lele44g0462 44 3488295 3496404 Lele39g1058 39 19194500 19201233 CCT
Lele44g0462 44 3488295 3496404 Lele40g0325 40 2667799 2676387 CCT
Lele38g0331 38 2622252 2628895 Lele44g0462 44 3488295 3496404 CCT
Lele40g0311 40 2502857 2509419 Lele44g0462 44 3488295 3496404 CCT
Lele41g0915 41 18644887 18654110 Lele44g0462 44 3488295 3496404 hybridization
Lele42g0895 42 21701590 21710379 Lele44g0462 44 3488295 3496404 hybridization