Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0461 ATGACTTTTTTCTGGGGACCTCACTTGTATTTGCTTCACTTTCTTCTCTTCCTTCTTCACCTCCAATCCCTTTCTTCGTATACCACGCCCTTGGATTGTAAGGACACAACGCGGGTCTGCACTTCTTTCTTGGCCTTTAAGCCTCAACCAAATCAAACCTTAGACTTGGTTCAGAGCATGTTTGATGTATTGCCTAAAGACATTACTGTTGAAGGCAACGACCGGGACTACATATTCATCAAAAAGAACTGTTCTTGTGCTGCTCGAACAAACAAATACATATCCAGCACCACTTATACTGTAAAGTCCAATGAAGGGTTGGTGTATGATTTGGTGATGAAGTACTATGATGGGCTTGGTTTCTTGCCCAAAACGACCAGGAGGGCAGAAAACGGAGCCGTCATAACACTGAACTTGTTATGTGGTTGCTCCAGTGGACCTTGGAACTATATGCTGAGTTATGTGATGAGAGAAAGTGATAGCATCGAATCTCTTGCAAGTCGGTTTGGAGTTAGTATGGATAGTATAGAGACAGTAAATGGCATCAACAATCCCGATACTATCACTGTGGGTTCACTGTATTATATACCTGTTAATTCGGTTCCTGGTGAGCCATATACCCAGAAGAATGATACTTCCGCAGCTCCTGTTTCTGCCCCTTCTTTTAACAATGTTTCTGCTAGTCCAGTCAGTCATGCTCATGCACCCTATGTATGGATCGTTGGGGGTTTAGGGCTTGGTCTTGCCCTGATAATATTAAGCACAATTCTTTATTTCTGTGTGAGATCATCCAATTGTTTTGTTGAAGCAAGCACAAGTCATGAAAATGATGATGAAGGCGAGATCTCTCACAAATTTCATATAATTCAAAATCCAAGTTTTTGCTGTGGTTCAGGAAGGTACACACAGGGAAAACCTGTAGAACAGAGGCAATCTGATCGCGAATCCAACAACAACCACATTACTGCCCCCAAAGTTTCAACTTTGGGGATTGAAGTCTTTGAAGTGGAGAACCCTGTAATTTTCACATATGAAGAGATTTTTTCTGCAACTGATGGTTTCTCAGATTCAAATCTACTTGGGCATGGTATTTATGGTTCTGTTTATTATGGCTTCCTTCGTGACCAGGAGGTTGCTATTAAAATAATGACTGCTACAAAAACTAGAGAGTTCTTGTCAGAGATGAAGGTCCTGTGCAAGGTTCATCATGCAAATCTGGTAGAATTGATCGGCTATGCTGTTGGTCATGATGAGCTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTTAGAAGCTTTTTGCATGATCAACTGACTAAGGGTTCTTCCTCACTCTCTTGGATCATGAGGGTCCAGATAGCACTTGATGCTGCTAGGGGCCTTGAGTACATACATGAACACACCAAAACCAATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGCTTCCTTTAGAGCAAAAATTTCAGATTTTGGGTTAGCAAAACTTGTTAGGAAATCAAATGAAGAAGAAATTACCGCCACCAAAATTGTTGGCACATATGGTTATCTTGCACCAGAATACTTGAGCGATGGTCGTGCAACGACCAAAAGTGATGTCTATGCATTTGGCATTGTCCTTTTTGAGATAATATCAGGGAAGGAGGCCACTGTTCGGACAGAAGGCAAAATGTCAGAAAATCCTGAGAGACGTCCTCTTGTATCTATTGTAAGTTCTTCTTTACTCACAAGATATGATTCTGAATCCGGTGACATAAAACGGAGACTTATGTTGAATGAGATACTAGATATGTGGCAACAGATGAACGTGGTGGCTTCTAGAATCAAAGAGCTAGGTAATTTGTCAGTTGATAGTTGCTTGAATCAAATGTTGACAGCTCTTAGGAAATCACCCGATTCAATGAGTATGTCTAGTTTGAGAAATCATATTGATCCTAATATGATGGAGCTGTATCCCCATGATTGTGTATTTAAGATGGCTATGCTGGCAAAGCAGTGTGTGGATGATGATCCAATCTTAAGACCTGATATGAAACAAGTTGTGATTACACTCTCACAGATCCTTCTGTCTTCTGTGGAGTGGGAAGCAACTCTAGCAGGGAACAGTCAAGTATTCAGTGGGCTTGTTCAAGGAAGGTAG 2154 0.4095 MTFFWGPHLYLLHFLLFLLHLQSLSSYTTPLDCKDTTRVCTSFLAFKPQPNQTLDLVQSMFDVLPKDITVEGNDRDYIFIKKNCSCAARTNKYISSTTYTVKSNEGLVYDLVMKYYDGLGFLPKTTRRAENGAVITLNLLCGCSSGPWNYMLSYVMRESDSIESLASRFGVSMDSIETVNGINNPDTITVGSLYYIPVNSVPGEPYTQKNDTSAAPVSAPSFNNVSASPVSHAHAPYVWIVGGLGLGLALIILSTILYFCVRSSNCFVEASTSHENDDEGEISHKFHIIQNPSFCCGSGRYTQGKPVEQRQSDRESNNNHITAPKVSTLGIEVFEVENPVIFTYEEIFSATDGFSDSNLLGHGIYGSVYYGFLRDQEVAIKIMTATKTREFLSEMKVLCKVHHANLVELIGYAVGHDELFLIYEYAQKGSLRSFLHDQLTKGSSSLSWIMRVQIALDAARGLEYIHEHTKTNYVHRDIKTSNILLDASFRAKISDFGLAKLVRKSNEEEITATKIVGTYGYLAPEYLSDGRATTKSDVYAFGIVLFEIISGKEATVRTEGKMSENPERRPLVSIVSSSLLTRYDSESGDIKRRLMLNEILDMWQQMNVVASRIKELGNLSVDSCLNQMLTALRKSPDSMSMSSLRNHIDPNMMELYPHDCVFKMAMLAKQCVDDDPILRPDMKQVVITLSQILLSSVEWEATLAGNSQVFSGLVQGR 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0461 717 SMART LysM_2 153 197 IPR018392 -
Lele44g0461 717 ProSiteProfiles LysM domain profile. 152 196 IPR018392 -
Lele44g0461 717 ProSitePatterns Protein kinases ATP-binding region signature. 360 381 IPR017441 GO:0005524
Lele44g0461 717 Gene3D Phosphorylase Kinase; domain 1 328 425 - -
Lele44g0461 717 Pfam Protein tyrosine and serine/threonine kinase 358 554 IPR001245 GO:0004672|GO:0006468
Lele44g0461 717 FunFam PTI1-like tyrosine-protein kinase 3 426 627 - -
Lele44g0461 717 FunFam Kinase family protein 329 425 - -
Lele44g0461 717 Pfam LysM domain 154 192 IPR018392 -
Lele44g0461 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Lele44g0461 717 CDD LysM 153 196 IPR018392 -
Lele44g0461 717 Gene3D Transferase(Phosphotransferase) domain 1 427 704 - -
Lele44g0461 717 SMART serkin_6 354 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele44g0461 717 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 24 711 IPR044812 GO:0019199|GO:0045087
Lele44g0461 717 Gene3D LysM domain 149 208 IPR036779 -
Lele44g0461 717 SUPERFAMILY LysM domain 152 198 IPR036779 -
Lele44g0461 717 ProSiteProfiles Protein kinase domain profile. 354 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele44g0461 717 SUPERFAMILY Protein kinase-like (PK-like) 332 689 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0461 Lele-ChrLele44 3481387 3486212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0461 30 717 Receptor kinase-like Gene Family AT1G51940 58.393 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lele44g0461 PK_Tyr_Ser-Thr 2.9e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0916 41 18656620 18661589 Lele44g0461 44 3481387 3486212 hybridization
Lele42g0896 42 21713323 21718189 Lele44g0461 44 3481387 3486212 hybridization