Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0458 ATGGGGAAGGCTTCGAGGTGGTTGAAGGGCTTGTTGGGGATGAAGAAAGAGAAGGACCACCACTACCACCACCGTATCGACAATTGTGGTTCATTGGTTTCTGACAAGAAGGAAAAGAAACGATGGAGTTTTGCTAAGTCAGGAAAAGATTCCGATTCTGGAACCAGTCAGCCTCGTTTTCCACCTCCTGATTCCACCGCTTCTTGGTATAGATCCTTTATGTCGGAAACAGAGAAAGAGCAGAACAAGCACGCAATTGCGGTCGCCGCTGCCACCGCCGCTGCCGCAGATGCTGCCGCCGCCGCTGCTGAGGCTGCCGTTGCGGTGGTACGGCTCACCAGTCAGGGCAGAGGAACTCTGTTTAGTGGCAGTAGAGAAAAATGGGCGGCAGTTAAGATTCAAACCGTTTTCAGAGGCTATTTGGATCGAGTTGATGAAAAAAGGAGTGAGATTCACAGTAAAAGGTTATCAACATTGTATGAACAATCCTTCAATGGCTACGATGAGAGTCCCAAAATTGTTGAGATTGATACTGACAGGACTCAGTCGAGTTCTCGGAGAATGATCGCGACGACGTTTTCAGAATGTGGAGACGAAACACCGTTTCAAACGACGCCGTTTGCTGACAGTAAGCAGCACCTTCAGGACTTGGAGTGGTGTTTTCCGGGCGACGAGTGCAAATTCTCGACGGCTCAGAGCACTCCTCGGTTCGCAAACAGCGCGCGTTCTGATAACGCGCCTCCGACACCGGCCAAGAGTATATGCGGCGAGACGTTTTGCCGGGCGTACTATAATTTCCCGAACTACATGGCGAATACGCAATCGTTTAGGGCGAAAGTGAGGTCGCAGAGTGCTCCGAAGCAGAGGCCGGAGCCGAAGAGGAGGCTTTCGTTGAATGAGATAATGGCGGCGAGAAACAGCATAAGCAGTGTTAGAATGCAGAGGTCGTCTTGTTCTTCTCTAGTTGAATAG 972 0.5062 MGKASRWLKGLLGMKKEKDHHYHHRIDNCGSLVSDKKEKKRWSFAKSGKDSDSGTSQPRFPPPDSTASWYRSFMSETEKEQNKHAIAVAAATAAAADAAAAAAEAAVAVVRLTSQGRGTLFSGSREKWAAVKIQTVFRGYLDRVDEKRSEIHSKRLSTLYEQSFNGYDESPKIVEIDTDRTQSSSRRMIATTFSECGDETPFQTTPFADSKQHLQDLEWCFPGDECKFSTAQSTPRFANSARSDNAPPTPAKSICGETFCRAYYNFPNYMANTQSFRAKVRSQSAPKQRPEPKRRLSLNEIMAARNSISSVRMQRSSCSSLVE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0458 323 Pfam Protein of unknown function (DUF4005) 234 311 IPR025064 -
Lele44g0458 323 Pfam IQ calmodulin-binding motif 128 144 IPR000048 GO:0005515
Lele44g0458 323 ProSiteProfiles IQ motif profile. 126 155 IPR000048 GO:0005515
Lele44g0458 323 MobiDBLite consensus disorder prediction 40 67 - -
Lele44g0458 323 PANTHER IQ-DOMAIN 5-RELATED 1 143 - -
Lele44g0458 323 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0458 Lele-ChrLele44 3446583 3448069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0458 1 313 IQD Protein Family AT3G16490 44.560 7.33e-70 221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g0458 44 3446583 3448069 Lele37g0357 37 3008814 3010476 CCT
Lele44g0458 44 3446583 3448069 Lele39g1069 39 19275970 19277539 CCT
Lele41g0919 41 18691179 18692682 Lele44g0458 44 3446583 3448069 hybridization
Lele42g0899 42 21753738 21755224 Lele44g0458 44 3446583 3448069 hybridization