Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0449 ATGGATGGTCTTCTTCCCTGGGATACTTGTCAATTTGTCACCAATATGCCGATCTTTGAAGAGGAAGCTGCAGGCTACTCCATGCCTAACTTGGATTATCAAATTCAAGAGACGCAGAACAAAACAGCTCAAACAGATCATCGCTTTCATCTTTATTCAGCTTTTGATGATCTTGTGCCAGACTTCCATGATTTCGACACCTATATGGCGGACCACCGGCAACAACAATTCATCAATGGCGACACAGATGACGGGAATATTTCCATGATTCTATCTGATAGCTATAGAAGAAACATATGGAGCTTCAACAGCAATAATGTGAGTTCAGTTTCCTCTGGTGAATCTCAGAAGAGTAACAACACTACTCCCGCGGCTTCCAGTGGTAGCAGAAAGAACAAGGACGACGTCGTTCAGTATCACGTCAATGAAATATTTGAAGACGCCATCTCTCAGAGAACTCCATCACGTCAAGGCAATATTTCAGAACCTAATAATCCTAATCATGCAAAAAGGAGTTTTAGGCTCATTTCAGAGAATAAAAATCCATCAAAACCCAAGAAAACTAGATGGGAACACAACTTGTCATCTTCTTCAAGCATAAATTTTCGGCAGCCAAGCTCAAGCATATCATTCAATTCCAGTGTTAGCCAAGAGCCTGATCAAGAGGCCATAGCACAGATGAAGGAGATGATATATAGGGCTGCAGCTTTCAGGCCAGTGAACTTAGGGTTGGAGGCAGTGGAAAAGCCAAGAAGGAAGAATGTGAGAATATCATCAGATCCACAGACTGTAGCAGCGAGGCAAAGGAGAGAGAGAGTAAGTGAGAGAATTAGGGTTTTGCAGAAGATAGTGCCTGGTGGAAGCAAAATGGACACAGCTTCAACGCTTGATGAAGCTGCAAATTATCTCAAGTTTCTCAGGTCACAGGTCAAAGCATTGGAAAGTCTAGGGGACAAGGTCCATTATTATTCTATGAACTGTAATCCATTCTCTCTTACAAACCCCAGTCATCAGTATAATTTCCAGCAATAA 1032 0.4215 MDGLLPWDTCQFVTNMPIFEEEAAGYSMPNLDYQIQETQNKTAQTDHRFHLYSAFDDLVPDFHDFDTYMADHRQQQFINGDTDDGNISMILSDSYRRNIWSFNSNNVSSVSSGESQKSNNTTPAASSGSRKNKDDVVQYHVNEIFEDAISQRTPSRQGNISEPNNPNHAKRSFRLISENKNPSKPKKTRWEHNLSSSSSINFRQPSSSISFNSSVSQEPDQEAIAQMKEMIYRAAAFRPVNLGLEAVEKPRRKNVRISSDPQTVAARQRRERVSERIRVLQKIVPGGSKMDTASTLDEAANYLKFLRSQVKALESLGDKVHYYSMNCNPFSLTNPSHQYNFQQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0449 343 MobiDBLite consensus disorder prediction 192 215 - -
Lele44g0449 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 320 IPR036638 GO:0046983
Lele44g0449 343 Coils Coil 296 316 - -
Lele44g0449 343 MobiDBLite consensus disorder prediction 107 132 - -
Lele44g0449 343 CDD bHLH_AtIND_like 258 316 - -
Lele44g0449 343 MobiDBLite consensus disorder prediction 148 172 - -
Lele44g0449 343 Gene3D - 262 323 IPR036638 GO:0046983
Lele44g0449 343 MobiDBLite consensus disorder prediction 146 215 - -
Lele44g0449 343 Pfam Helix-loop-helix DNA-binding domain 267 306 IPR011598 GO:0046983
Lele44g0449 343 MobiDBLite consensus disorder prediction 107 133 - -
Lele44g0449 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 306 IPR011598 GO:0046983
Lele44g0449 343 SMART finulus 263 312 IPR011598 GO:0046983
Lele44g0449 343 MobiDBLite consensus disorder prediction 173 191 - -
Lele44g0449 343 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 83 336 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0449 Lele-ChrLele44 3363998 3365029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0449 170 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 69.536 3.31e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele44g0449 HLH 8.6e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0937 41 18914978 18916444 Lele44g0449 44 3363998 3365029 hybridization
Lele42g0909 42 21837715 21838749 Lele44g0449 44 3363998 3365029 hybridization