Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0442 ATGTATTGTACCATGTGCATAATGTCAGGTTTGGCAAACAAGAAGACCATCACTATTCAACCTGCGGATAAAGATCAATCTGTGTTGCTTGCAACTACCAAGACAAAGAAACAGAACAAGCCTGCTTCTTTGCTTCATAAATCTGTCATGAAAAAGGAGTTCCCAAGAATGGCGAAGGCTGTGGTAAACCAGGAAAATGGGTTGCACAGTTTAGTAATGTGCTGTTTCACGGTGGCAGACAACCACTACAGGCCTGATCTTAAGAAGGCAGCCCTTGCAAGGTTGAGTGCTGTTCATAGGAGCCTCAAAGTTGCCAAGTCTGGTGTTAAGAAGAGGAACAGACAGGCTGCCAAGGTTCCTGGCAGAAAGTGA 372 0.4489 MYCTMCIMSGLANKKTITIQPADKDQSVLLATTKTKKQNKPASLLHKSVMKKEFPRMAKAVVNQENGLHSLVMCCFTVADNHYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQAAKVPGRK 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0442 123 Gene3D - 6 107 - -
Lele44g0442 123 MobiDBLite consensus disorder prediction 104 123 - -
Lele44g0442 123 Pfam Ribosomal L28e protein family 8 101 IPR029004 -
Lele44g0442 123 PANTHER 60S RIBOSOMAL PROTEIN L28 8 123 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0442 Lele-ChrLele44 3315561 3317656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0442 9 116 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 67.593 3.41e-45 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g0442 44 3315561 3317656 Lele37g0341 37 2851341 2852666 CCT
Lele44g0442 44 3315561 3317656 Lele38g0322 38 2539060 2540382 CCT
Lele44g0442 44 3315561 3317656 Lele39g1083 39 19427918 19429222 CCT
Lele44g0442 44 3315561 3317656 Lele40g0301 40 2427074 2428399 CCT
Lele41g0945 41 18962704 18966922 Lele44g0442 44 3315561 3317656 hybridization
Lele42g0915 42 21883877 21897070 Lele44g0442 44 3315561 3317656 hybridization