Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0416 ATGACATTGGTGGGTCTGCTTTACTTGCAGAGCTCTTTTAAGACTGTTCCTTACTGTGATATCAAGTTTCTACTTCGAGCCACATGCTTCTATTACTCAGATTTCAGAACTCAAACTTGGGATCTTCGTTATGCTAGGTTCTTAAGATTGTTTTCATTTGTCTTTGAAACAAGCGCCAATCTGCATCATTCAAGTATTGCGCTTCCACCATCCCAATCATCTTCTAGAATTCCTGCAAGTATTGCAATTTCACCTTCAAAGTCATTACCTCATGGTTCTGTAGATTCTCCAATATCACAACAACGTCATTCAGTTTTTCCTGCAAAGCCTCCTTTTCGTGCTCCAAAGACAAGGAATTGGCCTGCACCTGCACCTGCGCCTGCACCATCGCGAGCATTTTTTTCAGTCTCCTTGAATGATTGCATGTCAGTGACTTGTTCAGAGCCTCTTACATATACGCCTTCTGGATCACCTTGTGGTTGTGTTTGGCCACTGCAAGTTAAGCTCGACCTTGGCATTGCAATATACAAGTTTTTCTCTCTGGTTTCAAAGCTTGCTGAGGAAATTGCAGCCAGTACTTCTCTTAATAGGAACCAAGTTCGCATTGTGGGAGCTGATGCAGCTAATCACCGACTAGAGAAAACCAATGTTCTTATAAACCTAGTACCTGAAGGAGTAAATTTCGATGATGCAACAGCATTTTCAATATATAAGAAATTCTGGCACAAGGAGATTCTCACAGATGCTTCCCTCTTTGGAGCCTATGAAGTGCTTTATGTTCATTATCCAGGTCTTCCACCGTCTCCACCTTCAAGCATCTCTAGTATGGATGATGTACCATACCCTGACTATGACTACAATGGAACAATAATGAAACCTTTAGGAGTAGATGTACCAGTGAATGAAAAGCATGGGAATAGTGAAAGAGGAAGCATGATTATAATAATTGTGTTGTCATGTATAACACTATCTGTTCTATTCATTGGAGCTGCATGGCTGTATCTGTTGAAATGTGGTTCTTGTGTTCAACAGCCTGAACATTTCCCAGATGATTCAATCCTATTATCTTCAAAACCATCAGGTGCTATTAAGTCATTGACTTACGGGAGCATACCAGGTTCTAGATCAATGTCATTCAGCTCTGGAACAATAATATATACAGGATCTGTCAGGACCTTCACTTTGAATGAAACGGAGAAAGCAACAAACAACTTTGATGCTCTTAGAATAATAGGAGAAGGTGGATTTGGGCTTGTCTATAAAGGTGTTCTACATGATGGAAGGGATGTGGCTGTGAAGATTCTGAAACGGCCTGATCATCACGGTGGCCGTGAATTCTTGGCAGAAGTCGAGATGCTTAGCCGCCTTCACCACAGAAATCTAGTCAAATTGATAGCTATCGCATCGACATGTGTGCAGCCAGAAGTCTCTCAACGCCCTTTCATGGGTGAAGTTGTTCAGGCCTTGAAGTTGGTTTGCTGTGAGTTTGATGATACAAGCATTATGAGATCAAGAAGCTTCCATGAAGAGAGTCTTCTAATAGAAGGAGATGGGAAATTTTCAGGTGATATGATGGCGGGTTTTCAGACATTAACAGAATCAAAGTTGCTCAGTCCCTTATCAGGCCAGGGATTTGAGTCCTTCAGAAGGCATTCTGCTTCAGAGCCCCTCGCTACTGAGAAAAATAGGACGGAATGGCAGAAATTGCGAAGTTCATCAGGAGGGAGCATTAGTGAACATGGATTTTCAAACTTCCCCACAAATTGA 1767 0.4182 MTLVGLLYLQSSFKTVPYCDIKFLLRATCFYYSDFRTQTWDLRYARFLRLFSFVFETSANLHHSSIALPPSQSSSRIPASIAISPSKSLPHGSVDSPISQQRHSVFPAKPPFRAPKTRNWPAPAPAPAPSRAFFSVSLNDCMSVTCSEPLTYTPSGSPCGCVWPLQVKLDLGIAIYKFFSLVSKLAEEIAASTSLNRNQVRIVGADAANHRLEKTNVLINLVPEGVNFDDATAFSIYKKFWHKEILTDASLFGAYEVLYVHYPGLPPSPPSSISSMDDVPYPDYDYNGTIMKPLGVDVPVNEKHGNSERGSMIIIIVLSCITLSVLFIGAAWLYLLKCGSCVQQPEHFPDDSILLSSKPSGAIKSLTYGSIPGSRSMSFSSGTIIYTGSVRTFTLNETEKATNNFDALRIIGEGGFGLVYKGVLHDGRDVAVKILKRPDHHGGREFLAEVEMLSRLHHRNLVKLIAIASTCVQPEVSQRPFMGEVVQALKLVCCEFDDTSIMRSRSFHEESLLIEGDGKFSGDMMAGFQTLTESKLLSPLSGQGFESFRRHSASEPLATEKNRTEWQKLRSSSGGSISEHGFSNFPTN 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0416 588 PANTHER OS01G0750732 PROTEIN 466 509 - -
Lele44g0416 588 MobiDBLite consensus disorder prediction 568 588 - -
Lele44g0416 588 MobiDBLite consensus disorder prediction 551 588 - -
Lele44g0416 588 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Lele44g0416 588 MobiDBLite consensus disorder prediction 553 567 - -
Lele44g0416 588 SMART tyrkin_6 405 573 IPR020635 GO:0004713|GO:0006468
Lele44g0416 588 Pfam Protein kinase domain 407 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele44g0416 588 Gene3D Phosphorylase Kinase; domain 1 377 475 - -
Lele44g0416 588 ProSiteProfiles Protein kinase domain profile. 405 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele44g0416 588 MobiDBLite consensus disorder prediction 87 103 - -
Lele44g0416 588 MobiDBLite consensus disorder prediction 87 112 - -
Lele44g0416 588 SUPERFAMILY Protein kinase-like (PK-like) 375 468 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0416 Lele-ChrLele44 3071895 3075862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0416 444 581 Receptor kinase-like Gene Family AT5G56890 38.125 4.79e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lele44g0416 Pkinase 8.5e-10 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g0277 38 2201820 2203780 Lele44g0416 44 3071895 3075862 CCT
Lele39g1131 39 19806236 19810826 Lele44g0416 44 3071895 3075862 CCT
Lele40g0263 40 2096905 2103857 Lele44g0416 44 3071895 3075862 CCT
Lele41g0972 41 19186723 19190421 Lele44g0416 44 3071895 3075862 hybridization
Lele42g0941 42 22128535 22132420 Lele44g0416 44 3071895 3075862 hybridization