Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0413 ATGATGAAGGGTTTGATGTTTCACCAGCAACAGCAACAACAAGTAGTGGAAGAGAACATGTCTAATTTGACTTCTGCATCTGGTGAAGCCAGTGTTTCCTCAGGCAATAGAAATGAAATTGGTACCAATTATCCTCCACAACAACAATACTTTGCTTCACCATCAACTCAAACTCAAACTCAGCCCCTGAAGAAAAAGAGAAACCTTCCTGGGAATCCAGACCCATATGCTGAAGTTATAGCCTTGTCTCCCAAGAGTCTTCTGGCAACAAACAGGTTCATATGTGAGATCTGCAACAAAGGATTTCAGAGAGACCAGAATCTGCAACTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAGAGAACAAACAAAGAAGTGAGGAAGAAGGTGTATGTGTGCCCAGAACCCACATGTGTGCACCATGACCCAGCAAGAGCACTTGGGGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAGAAATGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGAGACAGTTTCATAACACACAGAGCCTTCTGTGATGCATTGGCAGAGGAAAGTGCAAGATCTTCAAACCCACTTCTTCATCCTCAACCAACACCCAGTTCTTCATCATCAGCATCTCACATTCTGAATGTCCAAACCCAACTGAATAATCATCACCAAGATCTCCATTCTTTACAACCGAAGAAAGATCATCATCAACAACAACAAAGCTTCATCAACCTCAGGCCAGAAATACCCCCTTGGCTAGCTCCTCCAGCTGGGCCATCATCCACCAGCATTGACCTCTCTTCCCCATCGTCATCTTCAATCTTCTCCACAAGATTCGATCATGACTTTTCACGAACGCCTCACGGGCAGCATCAGCAAGATCTGAGCCAGCTCCATGAAAACCCTAACCCTACTAGTTGCCAGCTTGGGCCCACCCTCCCTCCTGCCTACCAACCAGCGCCTTCCCCGCACATGTCAGCAACAGCCTTGTTGCAGAAAGCAGCACAAATGGGTGCAACCATGACTACCAAAACAAAACCAGCTGCCATGATTAGGACCCACCATCAGACTCACGTGCCTCTTATTCCTGACTCTTTTTCTGGTGTCACCAATTCAATCTCATCAACTAGTGGTAATTTTGGTTTGAATTTGTCATCACGTGAATCTGCAGTACTTCTCCCTCCTTCTGCGTCTTCTGCTTCTGCTAGTACTGTTTCTCCTTCTTCCTCAGGCGTTCTTCCTCCTCCTCCTTCGTTTCTTCTTCATGATGTTATGAGTTCTTTCTCTGGTGGTGCTGGGTTCGAAGGAACGTCTTTTGAGGATGCTTTTGGTGGGATTTTGAACTCAAAGAATAATAAAGATGGAAGCTTTCTTGATACCCTTACAAAGGCAACAAGTGCCCCCTCCGGATCCGCCGATGACGGTGGTGGGAATGAAGGTTTGACGAGAGATTTCTTGGGTCTTAGACCTCTCTCCCACAATGAGATCCTCAGCTTTGCTGGAATTGGAAACTGCATGAACCCCTCTTTCCATGATCAAAAGAAACAATCCCAAAAACCATGGCAAGAACCCAGAAATATAAATGACTTGTGGAAGCCAAGAAGGGCATTGAAAGTTGCAGAAAGAAACTTAGTATTGTCACCAATGGCAGACATTGGACTTGTCTGGGATTTAGTGAAAGATGCTGTGGCAATTGTGGTAAAGGGTCTGGACTACAAGAGCACTCGCAAGAATCTGGAATCAACCGTCGATAATTTTAGCAAAAAGGTTGAAAAGCTCGTAGCCATGAAAGTAGCCAAACCAATTCATCGTCTGCACGGAAAACCCATAACAACAGCACACACGTATTCAAGGATCATCTTCACGAGATCTACAGTGGGATTGGATGGTAATTCCATGCAAGAGCTGAAGGCTAAGCTGCTCCATGGTGCTGACCAAGTTCTTAACTTGTATGGTAATATTAGGTTTCTTGACATCCCTTACCGTGTAAGCCTCAGGAAATTACCAGACAACATTGGTGAGCTAAGGAGTCTGAGAAAGTTTTATATGACGAGTTGTCCAATAAACGAATTGCCAGACTCAATCAGGGATATGGAGCATCTAGAGAATGTTTTATGA 2223 0.4498 MMKGLMFHQQQQQQVVEENMSNLTSASGEASVSSGNRNEIGTNYPPQQQYFASPSTQTQTQPLKKKRNLPGNPDPYAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEPTCVHHDPARALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSSNPLLHPQPTPSSSSSASHILNVQTQLNNHHQDLHSLQPKKDHHQQQQSFINLRPEIPPWLAPPAGPSSTSIDLSSPSSSSIFSTRFDHDFSRTPHGQHQQDLSQLHENPNPTSCQLGPTLPPAYQPAPSPHMSATALLQKAAQMGATMTTKTKPAAMIRTHHQTHVPLIPDSFSGVTNSISSTSGNFGLNLSSRESAVLLPPSASSASASTVSPSSSGVLPPPPSFLLHDVMSSFSGGAGFEGTSFEDAFGGILNSKNNKDGSFLDTLTKATSAPSGSADDGGGNEGLTRDFLGLRPLSHNEILSFAGIGNCMNPSFHDQKKQSQKPWQEPRNINDLWKPRRALKVAERNLVLSPMADIGLVWDLVKDAVAIVVKGLDYKSTRKNLESTVDNFSKKVEKLVAMKVAKPIHRLHGKPITTAHTYSRIIFTRSTVGLDGNSMQELKAKLLHGADQVLNLYGNIRFLDIPYRVSLRKLPDNIGELRSLRKFYMTSCPINELPDSIRDMEHLENVL 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0413 740 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lele44g0413 740 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Lele44g0413 740 MobiDBLite consensus disorder prediction 22 66 - -
Lele44g0413 740 FunFam protein indeterminate-domain 5, chloroplastic-like 147 226 - -
Lele44g0413 740 SMART c2h2final6 93 115 IPR013087 -
Lele44g0413 740 SMART c2h2final6 169 189 IPR013087 -
Lele44g0413 740 SMART c2h2final6 134 164 IPR013087 -
Lele44g0413 740 FunFam protein indeterminate-domain 12-like 72 140 - -
Lele44g0413 740 MobiDBLite consensus disorder prediction 22 71 - -
Lele44g0413 740 MobiDBLite consensus disorder prediction 324 338 - -
Lele44g0413 740 SUPERFAMILY beta-beta-alpha zinc fingers 92 189 IPR036236 -
Lele44g0413 740 Gene3D Ribonuclease Inhibitor 658 739 IPR032675 -
Lele44g0413 740 MobiDBLite consensus disorder prediction 283 338 - -
Lele44g0413 740 Coils Coil 611 631 - -
Lele44g0413 740 Gene3D Classic Zinc Finger 148 227 - -
Lele44g0413 740 Gene3D Classic Zinc Finger 76 140 - -
Lele44g0413 740 MobiDBLite consensus disorder prediction 295 315 - -
Lele44g0413 740 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 46 542 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0413 Lele-ChrLele44 3045020 3053395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0413 1 544 IDZ Gene Family AT1G55110 48.325 1.14e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele44g0413 None None None