Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0403 ATGGGGCATCATTCTTGCTGCAACAAGCAGAAGGTGAAAAGAGGGTTATGGTCACCTGAAGAAGATGAAAAGCTCATCAACTACATCACTACTTATGGTCATGGTTGCTGGAGCTCTGTCCCTAAACTTGCTGGTCTGCAGAGGTGTGGGAAAAGTTGCAGATTGAGATGGATCAATTACCTAAGACCTGATTTGAAACGAGGAAGCTTTTCTTCTCAAGAAGCAGCACTCATTATAGAGCTCCATAGCATTCTAGGCAACAGGTGGGCTCAGATTGCCAAGCACCTACCTGGAAGAACTGACAATGAGGTCAAGAACTTCTGGAACTCAAGCATCAAGAAGAAGATGCTTTCTCATCATGATCATCTTCTTCCTCCTTCTTTTTCCACCTTTTCTGATCATCTTCTTCACCATCATCATCATAATGTTCCTGTTGAAGCCTTCTTCCCTCCTTCTTCAAACCCTAATAATCTCCTCCTTAACTACTCTCATTATCTTCAACCTGATCAGCTATACCTTCCCAGTACTACTCCATCATCAATAATCCCACAAGCTCTCAACAATGGCCTCCATCATAAATCTGATCATGTTGAAGTAGACGACATTGCCAATTATAACCCCTATAGCAACAGTTTCCTTCATGTCCACCAGAATCCCATCTCATCAGAAAGCACACCACCACCCAATATTATTATTCCATCTTCATGTGAAGATGCCCATAATAATAACAATAATGATACATTGTCATCAATATTGGGTCTGATGAGTAATCCAAATCAAGATGATAATCATCAAATTACCAAAAATGATAATCTTCGTCATCTTGTTGCAGAGAAATCCATGAACCCACCAGCAGGTTCGATGTTAATGCAGCAGCATTATGATCCTGATGACAACTTGCTGATGCCCAAAATCTGTGATGCTAGCTTTGAGGATTGTGTGTTGAGCAGTACTAGTACAGTGCCATCATCTTCATCTTCTTATTCACAAGACTTGTTATTACAGGACCCTCTTGCCAGAATCCAGTGTTACACACCGTCATCTGGTTTTTGTCCACAACAAGATCATCAAACTTTATTCTCAGCCAATCAAATGGAGTACATTGATGCAATCCTATCATCGTTGCCGACGACGACAACAAACCCTATTCTTCCATGTAGCTTGCAGGAGCCTTGA 1176 0.4133 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSSQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKMLSHHDHLLPPSFSTFSDHLLHHHHHNVPVEAFFPPSSNPNNLLLNYSHYLQPDQLYLPSTTPSSIIPQALNNGLHHKSDHVEVDDIANYNPYSNSFLHVHQNPISSESTPPPNIIIPSSCEDAHNNNNNDTLSSILGLMSNPNQDDNHQITKNDNLRHLVAEKSMNPPAGSMLMQQHYDPDDNLLMPKICDASFEDCVLSSTSTVPSSSSSYSQDLLLQDPLARIQCYTPSSGFCPQQDHQTLFSANQMEYIDAILSSLPTTTTNPILPCSLQEP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0403 391 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele44g0403 391 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Lele44g0403 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele44g0403 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele44g0403 391 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele44g0403 391 FunFam MYB transcription factor 6 66 - -
Lele44g0403 391 Gene3D - 69 116 - -
Lele44g0403 391 PANTHER MYB DOMAIN PROTEIN 55 1 277 - -
Lele44g0403 391 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele44g0403 391 CDD SANT 17 61 IPR001005 -
Lele44g0403 391 CDD SANT 69 109 IPR001005 -
Lele44g0403 391 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele44g0403 391 SMART sant 13 63 IPR001005 -
Lele44g0403 391 SMART sant 66 114 IPR001005 -
Lele44g0403 391 Gene3D - 11 67 - -
Lele44g0403 391 FunFam Myb transcription factor 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0403 Lele-ChrLele44 2958272 2959895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0403 1 118 MYB Transcription Factor Family AT3G13890 94.915 1.27e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele44g0403 Myb_DNA-binding 1.5e-14 CL0123