Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0392 ATGGGAAATCAGAAGCAGAAATGGACGGCGGAGGAAGAAGAAGCATTACTCGCCGGAATAGCGAAGCACGGTCCCGGCAAGTGGAAGAACATTCTCAAGGACCCCGTGTTTGCGCCTTTCCTCACTAGCCGTTCCAACATTGACCTCAAGGATTTCTTAGGGTTCCTCATTCCCTGTAGTTGCTGGAACTTAAGTGTTAATACTGCTGCTCAAGGTTCTAAAGATAAAGCAAGGAATCCAAAGATTAAAGCTCTTATACCTGCTCCAGCTGCTAACTTTCAAAATGGTACTCCTGCTACTCCAGTTCGTCAAAGTGCAGCTTCTAATACCTCCATCGATGACGCAACTCAAAAAGCACAGGATGTGAAGAATGCTCCTCGGTATAATGGAATGGTTTTTGAAGCCCTGTCAACAATAAAAGATACTAATGGTTCTGACATAAATACCATTGTTAGTTTCATTGAGAAAAGGCACGAGGTACCTCCAAATTGCAGAAGGGCGTTAAGTATGAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAGAAGGTACAAAATTGTTACAGGATAAAAAGGGACAGTCCTTCCGGGGCAAAAGCACTTCCAGTGAAACAAAAGGACATCTGGCAACATCAACCACCAACCTCTAGTTTAGTGCCGCCTTATGAGAGCGCTAAGGATGCTGCTGATACTGCAGCGTACAGACTTGCAGAAGCCGAAAACAAATCATTTCTGGCTGCTGAGGCAGTCAAGGAAGCAGAAAGACTCGCAAAATTTGCCGAAGAAGCTGATGCAGTATTACAACTAGTTCGCGTGGTGAAACTATTGTCTTGGCTTGAAGTTGTTGAATACAAGTTCCACGGTGGAAGCAGTATATATGATGTGATAAATGATGTTTTATCACTTGGAAAGAGGGTGTCTCGATTGTAG 930 0.4419 MGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPVFAPFLTSRSNIDLKDFLGFLIPCSCWNLSVNTAAQGSKDKARNPKIKALIPAPAANFQNGTPATPVRQSAASNTSIDDATQKAQDVKNAPRYNGMVFEALSTIKDTNGSDINTIVSFIEKRHEVPPNCRRALSMRLRRLVAQGKLEKVQNCYRIKRDSPSGAKALPVKQKDIWQHQPPTSSLVPPYESAKDAADTAAYRLAEAENKSFLAAEAVKEAERLAKFAEEADAVLQLVRVVKLLSWLEVVEYKFHGGSSIYDVINDVLSLGKRVSRL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0392 309 Pfam Myb-like DNA-binding domain 5 33 IPR001005 -
Lele44g0392 309 MobiDBLite consensus disorder prediction 90 119 - -
Lele44g0392 309 Gene3D - 120 210 IPR036388 -
Lele44g0392 309 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 124 192 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele44g0392 309 Pfam linker histone H1 and H5 family 126 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele44g0392 309 Coils Coil 222 242 - -
Lele44g0392 309 PANTHER SINGLE MYB HISTONE 4 1 270 IPR044597 GO:0003691
Lele44g0392 309 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lele44g0392 309 MobiDBLite consensus disorder prediction 93 118 - -
Lele44g0392 309 FunFam Telomere repeat-binding factor 1 2 54 - -
Lele44g0392 309 SMART h15plus2 122 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele44g0392 309 SUPERFAMILY Homeodomain-like 2 51 IPR009057 -
Lele44g0392 309 SMART sant 4 59 IPR001005 -
Lele44g0392 309 SUPERFAMILY "Winged helix" DNA-binding domain 125 190 IPR036390 -
Lele44g0392 309 CDD SANT_TRF 6 51 - -
Lele44g0392 309 Gene3D - 2 52 - -
Lele44g0392 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0392 Lele-ChrLele44 2881143 2885076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0392 1 271 Single Myb Histone (SMH) Gene Family AT1G17520 50.347 2.06e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele44g0392 Linker_histone 3.6e-09 CL0123