Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0383 ATGTTGATTTGGCCTTTGAAGAACAACGTATGGGGGATTACGCTGAGCTGTAAATATGTCTTATGTTTGAGGATTGATATCGTATTGGTTTGTGGTTTTGAGCATTTGTTCGCTGGAACTTCTCTGATATCTCATTTGCATGAGGAATTCAACATCAAATGGTCAGTGCACTGTCGAGATAGGGAGGAGAGTGGGACGGAGAGAGTGAGGGACGGAGCCATGGAAGGTGGAGCACAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGAAGAAGAGCTGGACTTGTAAAAGCCCTTACCTCCGATGTTGAAGAATTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGTTATCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCCGAAGAAGTCCCTCCAGAACTTCCAGAGCCTGTGCTGGGCATAAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATCGCTTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGGCTTTTCAATATGATTAATGAACTGCCAACGATATTTGAAGTTGTTACGGGTACAGCAAAGAAACAACTTAAGGAGAAGTCTTCAGGTTCAAATCACAGTGGCAGTAAATCAAAGTCCAACTCTAAAGCGAGAGGTTCAGAATCTGTGGGAAAGCATTCCAAGGCTATGCAATCAAGAGACGAGGAAGAAGGACTGGATGTAGATGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGTACTGATGATTTCTGGATTTGTTGTGACATCTGCGAAAAATGGTTCCATGGAAAATGTGTGAAGATCACCCCAGCTAGGGCAGAGCATATCAAACAATACAAATGCCCTTCATGCAGTAACAAGAGAGCTCGTCCCTGA 978 0.4387 MLIWPLKNNVWGITLSCKYVLCLRIDIVLVCGFEHLFAGTSLISHLHEEFNIKWSVHCRDREESGTERVRDGAMEGGAQYNPRTVEEVFRDFKGRRAGLVKALTSDVEEFYNQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKQLKEKSSGSNHSGSKSKSNSKARGSESVGKHSKAMQSRDEEEGLDVDEDEHGETLCGACGENYGTDDFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0383 325 MobiDBLite consensus disorder prediction 218 262 - -
Lele44g0383 325 ProSiteProfiles Zinc finger PHD-type profile. 269 321 IPR019787 -
Lele44g0383 325 MobiDBLite consensus disorder prediction 240 256 - -
Lele44g0383 325 FunFam PHD finger alfin-like protein 264 320 - -
Lele44g0383 325 ProSitePatterns Zinc finger PHD-type signature. 272 318 IPR019786 -
Lele44g0383 325 Pfam PHD-finger 272 321 IPR019787 -
Lele44g0383 325 SMART PHD_3 271 319 IPR001965 -
Lele44g0383 325 SUPERFAMILY FYVE/PHD zinc finger 261 322 IPR011011 -
Lele44g0383 325 CDD PHD_AL_plant 271 321 IPR044104 -
Lele44g0383 325 Pfam Alfin 84 212 IPR021998 GO:0006355|GO:0042393
Lele44g0383 325 MobiDBLite consensus disorder prediction 218 239 - -
Lele44g0383 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 320 IPR013083 -
Lele44g0383 325 PANTHER CPG BINDING PROTEIN 81 324 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0383 Lele-ChrLele44 2802410 2807218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0383 74 324 Alfin-like Transcription Factor Family AT3G42790 75.889 1.54e-125 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele44g0383 Alfin 6.4e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1014 41 19450944 19455090 Lele44g0383 44 2802410 2807218 hybridization
Lele42g0982 42 22451120 22456147 Lele44g0383 44 2802410 2807218 hybridization