Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0381 ATGAATTTTCAACAAGTTGGACGGTCTAGATCCTCTAATGGATATGGCCGTCGAAAATCTGAAAGGGAAGGGGCAGCCAAGTCAGAGAATAAGATCTCATCTGGAAAGTCAAATGCCAACAGACTGGCAAGTACAGGTTTGGGGACTGGCAATATAGTTGATGGTCCTTCACATGATCGACTAGTATATGTTACAACATGTCTTATTGGGCAGCAGGTGGAAGTGCATGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATACTGAGAAAGATTTTGGAGTCATTTTAAAGATGGCTCGCTTGACGAAGGATGGTTCATTGCGAGGGCAGAAGTCTGGTATAGAATCAGTCAGCAAGGCTCCTTCAAAGACTATAATTATACCTGGCAAAGAATTTGTACAAGTCATAGCAAAGGGCGTTGCTGTTACTAGGGATGGTTTGCCTAGTGAAGCTCACCATGAAATGTATCAGGACATCATTGTTGATTCAGTAATATCGCAATCACGCCATGTTGACTTAGAGAGAGAACTACGACCATGGGTGCCTGATGAAGATGATCCGCAATGCCCTGAACTAGAAAATGTCTTTGATGAAACTTGGAAGAGGGGCTGGGATCAGTTTGAAACAAACAAAACGTTGTTTGGTGTAAAAAGCACGTTCAATGAGGAACTTTATACCACCAAGCTCGAGAAAGGCCCTCAGACAAGAGAGCTGGAGAAGCAAGCTTTAAGAATAGCAAGAGAAATCGAGGGTGAGGACCCCCAAAATCTTCATCTGGCTGAGGAAAGAGGCCTTTATCAACATAAGAATTTTGATATTGATGAAGAGACTAGATTCTCTTCAGTCTATAGAGATAAAGTGGTTGATGACAGTGGCTATATTGAGAATGAGGATATTCTGTTGGATTCAGGCAATTCTGAAACATTTGGAGATACATTCGCTTCAGTTGTTATGAGATCTGGTGAATCAAGTGATGGGAAAGATGATGATGGAGTTAGAACATCATCAAATTCATCCTCTAAGGATTTACCACAATCATCTCAGTCAAGTAATGGTGTGGATTTAGGCCGTGCTGGTTCTCACAATCTTGCCAATCAGTTAGCATCGGAACTCCCTGCAAAAAGTGACCCTACTTCGGATGCTGAATGCAGGGTTCAGGGGAACTCACTTAGTGATCTGCATGGAGCCATTGACAGTAGCAAAGAAGAAAATCAGATAGAATCTTGGGACATTCAACCGTCAAAATCCAAGGACTTACATTTATCACACAACTTGAAGAAAGATGACCCCGATACTGGGGCATTGTCTTCAAATGCCACCTCTCATGCCCCTTCATCTCATATTTCATTAAAGGCTCCTATGAAGACTGGTTTGCCTGTTGATTTGATTGAGGGTTCAACATCTGAGAAAGATTGTTTGAAAGGTGTTGCAGCATCTTCTGGTCCTGGTCTATCACCAAGTTCTTCAGTTGGTTCATTATCTTCTGAAAAATCAACACTGAATCCGAACGCAAAGGAATTCAAGCTCAATCCAAATGCAAAGAGTTTCGTTCCATCCCATTCACCAGTTAGGCCTCCCTCACAGGTGTCTGATGGCTCCTTCTATTACCCATCTAATGTAACTACAGTACCGCATATGACTGCCATGCCCATGGAACTTGGAATGGGACATGCATTTGCTGGGCCGCAACCTGTCCTGTATAATCCGCAAGTAGCACAAATGTCATCACAAGCATATTTCCATCCAAATGGACCACAGTACGGACAGTTTCTTAGTCATCCCAGGCAAGTTTTGTACATGCCAGGTTATTTACCTGAAACACCATGTAAGGGACGGGAATACTAA 1857 0.4238 MNFQQVGRSRSSNGYGRRKSEREGAAKSENKISSGKSNANRLASTGLGTGNIVDGPSHDRLVYVTTCLIGQQVEVHVKNGSIYSGIFHATNTEKDFGVILKMARLTKDGSLRGQKSGIESVSKAPSKTIIIPGKEFVQVIAKGVAVTRDGLPSEAHHEMYQDIIVDSVISQSRHVDLERELRPWVPDEDDPQCPELENVFDETWKRGWDQFETNKTLFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEDPQNLHLAEERGLYQHKNFDIDEETRFSSVYRDKVVDDSGYIENEDILLDSGNSETFGDTFASVVMRSGESSDGKDDDGVRTSSNSSSKDLPQSSQSSNGVDLGRAGSHNLANQLASELPAKSDPTSDAECRVQGNSLSDLHGAIDSSKEENQIESWDIQPSKSKDLHLSHNLKKDDPDTGALSSNATSHAPSSHISLKAPMKTGLPVDLIEGSTSEKDCLKGVAASSGPGLSPSSSVGSLSSEKSTLNPNAKEFKLNPNAKSFVPSHSPVRPPSQVSDGSFYYPSNVTTVPHMTAMPMELGMGHAFAGPQPVLYNPQVAQMSSQAYFHPNGPQYGQFLSHPRQVLYMPGYLPETPCKGREY 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0381 618 PANTHER ATAXIN 2-RELATED 34 607 IPR045117 GO:0003723
Lele44g0381 618 MobiDBLite consensus disorder prediction 14 29 - -
Lele44g0381 618 MobiDBLite consensus disorder prediction 1 40 - -
Lele44g0381 618 Pfam Ataxin 2 SM domain 58 142 IPR025852 -
Lele44g0381 618 Gene3D - 65 139 - -
Lele44g0381 618 Pfam LsmAD domain 218 288 IPR009604 -
Lele44g0381 618 MobiDBLite consensus disorder prediction 485 533 - -
Lele44g0381 618 MobiDBLite consensus disorder prediction 324 363 - -
Lele44g0381 618 MobiDBLite consensus disorder prediction 477 533 - -
Lele44g0381 618 MobiDBLite consensus disorder prediction 417 456 - -
Lele44g0381 618 MobiDBLite consensus disorder prediction 417 434 - -
Lele44g0381 618 SMART LsmAD_2 218 289 IPR009604 -
Lele44g0381 618 MobiDBLite consensus disorder prediction 435 451 - -
Lele44g0381 618 FunFam Polyadenylate-binding protein-interacting protein 3 62 135 - -
Lele44g0381 618 Pfam Ataxin-2 C-terminal region 500 512 IPR009818 -
Lele44g0381 618 MobiDBLite consensus disorder prediction 340 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0381 Lele-ChrLele44 2789809 2795894 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1016 41 19462932 19470163 Lele44g0381 44 2789809 2795894 hybridization
Lele42g0984 42 22462632 22468743 Lele44g0381 44 2789809 2795894 hybridization