Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0366 ATGTCGTCTCACGAACAAGCCCTAGTATCCCTTTTTTCCCAGCTAGCCTTGTCCTTCGACGGCGCCATTTTGGGTGTCGCATTGGCCTATGCCGCTGTCCGGTCCGTCGTCAAACTTACCGCTAACTCTACCGCGCTCGACAAGCTCAGCGTCGCCCCTACCCTCTCCGTTTCTGACCTTCGGTCATTTCTGGACAGTTCCAACGCTGGCGGCAATTCACAAGATTGCAACAAATTCGTTATTGTCCGTGGCACTGTCGAGGCCAAGTCTGCCGTTGAGAGCGGCTGGAAAAGCTTAAGACCTAGTGTATTAGTTTCTCGCGAGTCTGGCGATAAGGCCGTGGCTATTCAGAGAACTCAAACGGTAATGTTCTTCTACCACTAGTCTGAGGTCAATGTGGATTTTGCCCTTTTGTCACACAAATGGGTTGGTTTATGGTGCTTTGGCTTTGTTTTTATCGGTGTTCTGATGGCTGGCAATGCATTTTGCTGTTTCATTTTCGTTCTAATAAAGACAAGGCCAAACTTCACATTACGTAACTCTTGTGTATATACTGAATGGAAGGGCTTCTTTGGTTGGACTTCTGATCTTCGAGCCTTATTTGCTCGAAATTGGAGGCAGCAAGGGTCTACATCTTTAAGAACGGTGCCCTTTATTCTCATTGATGGTGGACGTCGACCTCATGCTGATTATGTTGTTGTTAACTTGGAAGGCTCAAGACATCCCTTACCTCTTACTACAGTTTATCGTAAATTGCAACCCATAAATGCTTCTCCATACACATTCCTGGAGGCACTTTTCGGACATGAGTATCCATCGTGCAAAGAGTTGCCATATTTTCTGTCTGAATTGAACAAAGATCAGATGGTTGTGGATCTTACATTTAAAACTAAGGTACTTTTTTGGAGTGGTATCATTCTGGGTTCACTGTCAGTTGGCATTCTTGGTTATGCTTTTATGAGGAACTGGAACAAGTGGAAACAATGGAGGCAACAGAGGCAGGCTCAACAGCAAGGACAAGCCAACTATGATAATGCTGCTGAATTCGAGATTTTAGACGATGAGATAGAAGATGTTCCAGATGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTGTTCATTCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATATCAGTTGAACGTGAAGTGGCACCCAAGTGTCCTGTTTGTCGCCAGGAAATTCGCAATTCAGTGCGGATATTCGAATCGCGAGTAGACAGTAGCTACTACTCGGTTAACAGCTTCGAGTCTGCCATGCCCGATGTAACACATCTATCTTGGTTTTTGATTAGCAGAAGAGTTGCATTTTCTTTTCTATTTAGATGA 1368 0.451 MSSHEQALVSLFSQLALSFDGAILGVALAYAAVRSVVKLTANSTALDKLSVAPTLSVSDLRSFLDSSNAGGNSQDCNKFVIVRGTVEAKSAVESGWKSLRPSVLVSRESGDKAVAIQRTQTVMFFYHXSEVNVDFALLSHKWVGLWCFGFVFIGVLMAGNAFCCFIFVLIKTRPNFTLRNSCVYTEWKGFFGWTSDLRALFARNWRQQGSTSLRTVPFILIDGGRRPHADYVVVNLEGSRHPLPLTTVYRKLQPINASPYTFLEALFGHEYPSCKELPYFLSELNKDQMVVDLTFKTKVLFWSGIILGSLSVGILGYAFMRNWNKWKQWRQQRQAQQQGQANYDNAAEFEILDDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEREVAPKCPVCRQEIRNSVRIFESRVDSSYYSVNSFESAMPDVTHLSWFLISRRVAFSFLFR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0366 455 SUPERFAMILY RING/U-box 364 412 - -
Lele44g0366 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 272 IPR044247 GO:0004842
Lele44g0366 455 SMART ring_2 365 404 IPR001841 -
Lele44g0366 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 417 IPR013083 -
Lele44g0366 455 ProSiteProfiles Zinc finger RING-type profile. 365 405 IPR001841 -
Lele44g0366 455 Pfam E3 Ubiquitin ligase 200 271 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lele44g0366 455 Pfam Zinc finger, C3HC4 type (RING finger) 363 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0366 Lele-ChrLele44 2696076 2699646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0366 362 423 C3H Transcription Factor Family AT3G06140 35.484 1.29e-06 48.5