Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0334 ATGCAGAATCACAGGCTGAAGCAGCAGCAACAAGCTTTGATGCAGCAAGCTCTTCTTCAGCAACAGTCTCTCTACCACCCTGGCCTCCTAGCTCCTCCCCAGATTGAACCAATTCCGAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAATATACATACACAGGTTACTGAACCACTTCTGCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTTGATCGAAGATCAGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCACTTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGCGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTAAGCCCTGAGGTCACTGATGCTACTTTGTTTGCTTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAGACTGGGCGTTCTAGAGGGTTTGGTTTTGTTTCATTTCGTAATCAACAGGATGCTCAAAGCGCAATAAATGATTTGACTGGTAAGTGGATTGGTAGTAGACAAATACGTTGCAACTGGGCAACAAAAGGTGCTGGTTCTAACGAAGACAGGCAAAACTCTGACTCAAAAAGTGTGGTTGAACTAACAAATGGCTCTTCTGAAGAGGTTAAAGAGACAACTAACAGTGATGCTCCAGAGAACAATCCTCAATATACTACTGTCTATGTGGGCAATCTTGCTCCAGAGGCTACCCAGCTTGATCTCCATCACCACTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTTCGGGTCCAGCGGGATAAAGGGTTTGGTTTTGTGAGGTATAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAGTCTATTCTTTGCGGAAAACCAATTAAGTGCTCCTGGGGTAGCAAGCCCACTCCACCAGGAACCGCTTCAAATCCTCTACCCCCACCTGCAGCGGCACCTCTGCCGGGCCTCTCTGCAACTGATCTTCTGGCATATGAAAGACAGTTAGCAATGAGCAAGATGGGTGGTGTACATGCCCTTATGCATACCCAAGGACAGCACCCTCTTAAACAGGCCGCAATTGGAGGAAGTCAAGCTATATATGATGGTGGCTTTCAGAATGTTGCCGCTGCCCAACAAATGATGTACTACCAGTAA 1254 0.4633 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWIGSRQIRCNWATKGAGSNEDRQNSDSKSVVELTNGSSEEVKETTNSDAPENNPQYTTVYVGNLAPEATQLDLHHHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSILCGKPIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDLLAYERQLAMSKMGGVHALMHTQGQHPLKQAAIGGSQAIYDGGFQNVAAAQQMMYYQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0334 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
Lele44g0334 417 SMART rrm1_1 54 123 IPR000504 GO:0003723
Lele44g0334 417 SMART rrm1_1 260 330 IPR000504 GO:0003723
Lele44g0334 417 SMART rrm1_1 139 212 IPR000504 GO:0003723
Lele44g0334 417 SUPERFAMILY RNA-binding domain, RBD 132 225 IPR035979 GO:0003676
Lele44g0334 417 Gene3D - 136 238 IPR012677 -
Lele44g0334 417 CDD RRM3_TIA1_like 259 334 - -
Lele44g0334 417 FunFam oligouridylate-binding protein 1B-like isoform X2 1 135 - -
Lele44g0334 417 CDD RRM1_TIA1_like 55 125 - -
Lele44g0334 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 334 IPR000504 GO:0003723
Lele44g0334 417 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Lele44g0334 417 SUPERFAMILY RNA-binding domain, RBD 250 341 IPR035979 GO:0003676
Lele44g0334 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Lele44g0334 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 324 IPR000504 GO:0003723
Lele44g0334 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Lele44g0334 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Lele44g0334 417 Gene3D - 239 338 IPR012677 -
Lele44g0334 417 FunFam oligouridylate-binding protein 1-like isoform X2 136 231 - -
Lele44g0334 417 FunFam Oligouridylate-binding protein 1C 236 338 - -
Lele44g0334 417 Gene3D - 1 135 IPR012677 -
Lele44g0334 417 CDD RRM2_PUB1 139 213 - -
Lele44g0334 417 MobiDBLite consensus disorder prediction 216 256 - -
Lele44g0334 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0334 Lele-ChrLele44 2441184 2445247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0334 48 334 Eukaryotic Initiation Factors Gene Family AT1G49760 29.739 1.65e-26 110