Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele44g0310 | ATGAGCTTCTGTCAGATTTGCATGGAAGACAAACCAATGGAAAAGATGTTCAGGGACAACAAAAGCTGCGAACATGTTTTCTGTTCAGACTGCATGGCATCCTACGTGGCGTCGAAGCTTCAAGAGAACATATCAACAGTGAAATGCCCTGACCCAAAATGCAGAGGCATCATAGAGCCTCTCTATTGTCGATCAATAATCGCAGAAAAGTTATTTGAAAGATGGGAAAATGCAGTGTGCGAGAACCTGATTCTTGGGTCTCAGAAATTTTACTATCCATTTAAGGATTGCTCGGCCATGTTGGTGGACGACGGCGACGAGGTGGTGACATCCTGGGAGTGTCCAAACTGCAGGAGGCTGTTCTGTGCTCAGTGCAAGATGGCGTGGCACGCTGGTATGGATTGCACGGAGTTTCAGAGCCAGAAAACGGATCAGACACAGAACGATGATATGCTGAAGGAACTCGCCAAGAACAAGAGATGGAGGAGAACATTTGACTTGGAGCCATTAATTAAGCAGATTGTGATTGATACACTGATAATGTTACAGTTTGTTGAACTGAACTGCATTGTGTTTGTGTCTGTGTTTTCTGCTGTATTTTGTCTTAGGTTTTGA | 615 | 0.4439 | MSFCQICMEDKPMEKMFRDNKSCEHVFCSDCMASYVASKLQENISTVKCPDPKCRGIIEPLYCRSIIAEKLFERWENAVCENLILGSQKFYYPFKDCSAMLVDDGDEVVTSWECPNCRRLFCAQCKMAWHAGMDCTEFQSQKTDQTQNDDMLKELAKNKRWRRTFDLEPLIKQIVIDTLIMLQFVELNCIVFVSVFSAVFCLRF | 204 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele44g0310 | 204 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 4 | 163 | IPR031127 | GO:0004842|GO:0016567 | |
| Lele44g0310 | 204 | FunFam | RBR-type E3 ubiquitin transferase | 1 | 86 | - | - | |
| Lele44g0310 | 204 | SMART | ibrneu5 | 73 | 135 | IPR002867 | - | |
| Lele44g0310 | 204 | SUPERFAMILY | RING/U-box | 3 | 82 | - | - | |
| Lele44g0310 | 204 | ProSitePatterns | Zinc finger RING-type signature. | 23 | 32 | IPR017907 | - | |
| Lele44g0310 | 204 | ProSiteProfiles | TRIAD supradomain profile. | 1 | 204 | IPR044066 | - | |
| Lele44g0310 | 204 | ProSiteProfiles | Zinc finger RING-type profile. | 4 | 53 | IPR001841 | - | |
| Lele44g0310 | 204 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | IPR013083 | - | |
| Lele44g0310 | 204 | Pfam | IBR domain, a half RING-finger domain | 39 | 135 | IPR002867 | - | |
| Lele44g0310 | 204 | SUPERFAMILY | RING/U-box | 96 | 140 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele44g0310 | Lele-ChrLele44 | 2271275 | 2272177 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele44g0310 | 4 | 148 | C3H Transcription Factor Family | AT2G31770 | 24.183 | 9.42e-09 | 52.8 |