Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0283 ATGGAGGATGGAGATATTAGGGATTCGGGGGCAATTGACGATGGCCAAGAAGTAACTCGCTCCTCTCCCTCGTACTGGCTGGACGCTTGTGAGGACATTTCCTGCGATCTCATTCATTTCGATGATGGGTCCATAGTCTCAGAACAGGTCGATAACAATCTGATACAGGACGGACTGGTTAACGATTTCTTCGGTGGCATTGATAGCATTCTTGACAGTATTAAGAACGGCAGTGGCCTCCCTGTGGCCACTGAAACTGAAAATGGAAACCAAGATTTTGCGTTGGCACTGCAAGCTGAAATCTCCGATCAGAAAGATAATATTGGGAAGAATGGGTTTGCTGGTGAAAAACATGGTCGTGCTGTTGAAGTGTGGGAGCATTCAGAAGCTGAAAGTAATGGGTATAAAGTATCTAATGTCAATGAAGAAGCGAGAACTTTGGGTGATTCTAAGGAAAATGGAGGTGGTGATCTATCTAGGGAGCATCATGTGGATGGTGAAGAAAGATTTGGCAAGAGGGCTCGGCTCGGCGGTTATAAGAATGAGAGGCTTTATCCGGGCAGAGGGAATTACCAACCCAAGGAGAGGGAGAGGTGTCCTAATAGAAAGAGGCCCCGGGAGTGGGATGAGGTTGATAGGAAGGAAAAAGATAGTGTGAGGAGAAGAGAAAATTTCAATGGTTGTGGTAGGAGAGATGTTAGAGACAGGGACTGGAGGGATAGAGAAAAGGGTTACTGGGAGAGGGATAAGTCAGGTTCCAATGACATGGTCTTTCGCTATGGCACTTGGGAAGCTGATCGATATCGAGAAGGTAAGGTTGCTAATGACACTAGACAAGAATGCACTGGAAAGATTGAGACTAAAACTGAGGAGCCAAAGGAGAGAGTTCCTGAGGAAAAAGCTAGAAAGTACCAGTTAGATGTTCTTGAGCAGGCAAAGCAGAGAAATACTATAGCTTTTCTTGAAACTGGGGCAGGGAAGACCCTCATTGCTGTTCTTCTCATGAAAAGTATTCATGAGAGTTTACAAAAGCAGAATAAAAAAATGCTTGCAGTATTTTTAGTTCCCAAAGTACCGCTTGTTTATCAGCAAGCAGAAGTAATTCGAGAGCGAACTGGCTGCCAAGTGGGTCACTACTGTGGAGAAATGGGGCAGGACTTCTGGGATGCTCGAAGGTGGCAACGTGAATTTGAAACAAAACAGGTTCTAGTCATGACAGCTCAAATTCTTTTGAACATTCTGAGGCACAGCATAATAAAAATGGAAACAATCAATCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAGAAACACCCTTATTCACTGGTGATGTCTGAGTTCTATCATATGACACCCAAAGAGAAGAGACCATCTGTTTTTGGAATGACTGCTTCTCCTGTTAACTTGAAAGGTGTATCAAGCCAAGTGGATTGTGCAATAAAAATAAGGAATCTTGAAAGTAAGCTAGATTCTGTAGTTTGTACCATTACTGATCGTAAGGAGCTGGAGAAGCATGTACCGATGCCTTCTGAAGTTGTGGTGGAGTATGACAAAGCAGCTAGCTTGTGTTATCTTCATGAGCAGATAAAGCAAATGGAAGTTGAAGTTGAAGAAGCTGCAAAGTCAAGTTCAAGAAGAAGTAAATGGCAGTTCATGGGAGCTAGGGATGCAGGAGCTAAAGAAGAGCTCCGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGCGATGGAGCTGCAAACCTAATTCAGAAATTGAGAGCTATCAATTATGCACTTGGTGAGCTGGGTCAGTGGTGTGCTTATAAGGTTGCACATTCTTTTCTATCAGCTTTGCAAAATGATGAGAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCCTATCTGAATAAACTCGTGTCTCTTCTACAATGTCAACTGTTAGAGGGTGCAGTGTCTGACAAAAATGCTGGAGTTTCTGACTCAGAATGTCGTATGGCACAGGGTGGTTCTGAAGCTGATGATATTGAGGAAGGAGAGCTTCCAGACAGTCATGTTGTCTCTGGAGGGGAGCATGTGGATGTCATTATTGGAGCTGCTGTGGCGGATGGCAAGGTGACCCCTAAGGTTCAGGCTCTGATAAAAATACTTCTCAAGTATCAGCATACAGAAGACTTTCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCTTTAGTTCTACCCAAGGTTTTTGCAGAGCTTCCATCTCTGGGTTTTGTTAAGTGTGCGAGCTTGATTGGCCACAACAATAGTCAGGAAATGAGGACCTCACAAATGCAGGATACAATTGCTAGGTTCCGTGATGGACGAGTTACGTTGTTAGTTGCTACTAGTGTTGCTGAAGAAGGACTTGATATAAGGCAATGCAATGTTGTTATCCGCTTTGACCTTGCAAAGACTGTTTTGGCATACATTCAATCTAGAGGTCGTGCCAGAAAGCCTGGGTCTGATTATATCTTGATGGTTGAGAGGGGAAACCTGTCGCATGAAGCATTTCTAAAGAATGCCAGGGATAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTAAGTCATCTTAAAGACACTTCAAGGTTGATTTCAGTAGATACAAGACCAGGATCTGTTTACCAGGTGGAGTCAACTGGTGCAGTTGTGAGCTTAAATTCTGCCGTTGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTCCGTCCTGAGTTTATAATGGAGAAGCATGAAAAAACAGGAGGTCCCGCTGAATATTCTTGCAAGCTTCAATTGCCATGTAATGCACCATTCGAAAATCTTGAGGGTCCCATATGCAGTTCAATGCGCCTTGCTCAACAGGCTGTTTGTCTAGCTGCTTGCAAGAAGCTGCATGAGATGGGTGCGTTCACTGACATGCTGTTGCCTGACAAAGGAAGTGGAGAAGAAAGAGAAAAGGATGAGCAAAATGATGAAGGAGATCCACTTCCAGGCACTGCTAGACATAGAGAGTTTTATCCTGAAGGTGTTGCGGACGTACTAAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAGCTATTCCAAAGTGCTTCATCTTTATATGTATGCTGTTATGAGTGAAAACATAGGCTATTCAAAGGATCCATTCTTGACTCAAGTTTCAGATTTTGCAGTAATTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCGATGGATCTATTTATCGCACGGACCATGACTACAAAGGCATCCCTTGTCTTTAGAGGGTCAATAGATATTACTGAGAGTCAGTTGGCATCCTTAAAAAGCTTTCATGTAAGGTTAATGAGCATTGTCCTGGATGTGGATGTTGAACCTTCCACTACTCCTTGGGATTCTGCAAAAGCATATTTATTTGTTCCAATGGTTAGCGATAAGCCTTTAGATCCTATGAACCAGATTGACTGGCATTTGGTTGAGACAGTAATTGAAACAGATGCATGGAAAACTCCACTTCAGAAGGCTCGACCAGATGTTTATCTTGGCACAAATGAGCGAACTTTAGGTGGAGATAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCGTTTGGGCAAAAACCACACCCAACCTATGGGATCAGAGGAGCTGTTGCACAGTTTGATATAGTAAAAGCTTCAGGATTGGTTCCTAATCGGCAAGCCGTGCAAATGCAAAAACATATTAATAAGACTGCTCAAGGGAAATTGGTGATGGCAGATACCTGTACTAACGCGGAGGATCTGATAGGGAGGATAGTTACAGCTGCTCACTCGGGAAAGAGGTTTTATGTTGATTCTATACGCTATGATATGACTGCAGAGAACTCTTTTCCTAGGAAAGAAGGCTATCTTGGTCCTCTGGAGTACAGTTCGTATGCTGACTACTACAAACAAAAGTATGGTGTTGATTTAATTTACAAGCAGCAACCTCTTATAAGAGGACGGGGTGTATCATACTGCAAGAATCTTTTATCCCCTCGATTTGAACACAGTGAAAATGAAATCGAATCTGAAGAGGCTCATGACAAAACTTATTATGTCTTTCTTCCTCCTGAGCTATGCCTTATGCACCCCCTGCCTGGATCACTTGTTCGTGGGGCACAGAGGCTGCCTTCAATAATGAGGAGGGTCGAAAGTATGCTTCTGGCAATTCAACTCAAGAATATGATAAATTATCCTGTCCAGTCTTCCAAGATATTGGAGGCCTTGACTGCTGCCTCCTGTCAGGAGACATTCTGCTATGAAAGAGCAGAGCTTCTAGGAGATGCATATCTCAAATGGGTTGTTAGTAGATTTCTTTTCCTCAAATACCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGGCAACAAATGGTCAGTAACATGATATTATATCAGTATGCATTGAGCAAAGGACTTCAATCATACATTCAAGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCAGGGGTGCTGCCTGTATTTGATGAGGATACCAGGGATGGGGAGTCATCTTTATTTGATCAGGAGGGGTTGAGTCCAAAGACGGAGAAGATGAGTCACCTTTCTGATGGATTCGAGGATGATGAAATGGAAGATGGTGAGCTTGAGAGCGATTCAAGTGCTTATAGAGTCCTATCCAGCAAGACACTTGCAGATGTTGTAGAAGCTCTGATTGGGGTGTATTATGTTGAAGGTGGGAAGAATGCTGCGAATCATCTTATGAAATGGATCGGCATTCAGATAGAGTTTGATCCTGATAAGATGGAGTGTGCGAGGAAGGCAAATACTGTTCCTGAGAGCATACTTAGGAGTGTTAACTTTGATGCTTTGGAAGGTGTTTTGAATATCAATTTTAGAGACAAGGGGCTGCTTGTAGAAGCAATAACTCATGCATCAAGACCATCCTCCGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTCTTGGATCATCTCATTACTAGGCACTTGTTTTTCACTTACACAGATCTGCCACCAGGACGTTTGACTGACCTCCGAGCTGCTGCTGTAAACAATGAAAACTTTGCGCGTGTGGCTGTTAAACACAGTCTACATATTCATCTTCGACATGGGTCCAGTGCCCTAGAAAAACAGATTACGGAATTTGTAAAGGAAGTTCAAGAAGAATTGTCAAAGCCAGGGTTCAACTCCTTTGGCTTGGGAGATTGCAAAGCACCCAAAGTCCTTGGTGACATTGTTGAATCTATTGCCGGTGCCATTTTTCTTGACAGTAGTCGAGATACTTCCGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTGACTCCTGAGACTCTGCCAATGCATCCTGTGCGGGAGCTACAAGAACGATGCCAGCAGCAGGCAGAGGGCTTAGAATATAGAGCCTGTCGAATTGGAAATTTGGCTACTGTCGAAGTATTCATCGATGGCGTGCAAGTGGGGGCTGCTCGAAATCCTCAGAAGAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAGGAGAAGGAGGTAGCCACCAAAACTAAGGAGAAGGATGATGAAAATGGTAAGAAGAAGAAGAATGGAAACCAGACATTCACTAGACAAACATTAAACGACATCTGTTTGCGGAGAAATTGGCCTATGCCATTCTACCGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGATTTACATTTGCAGTTCGTGTCAATACTACTGATAGAGGATGGACAGATGAATGTATTGGAGAACCAATGCCAAGCGTGAAAAAAGCCAAGGATTCTGCTGCTGTTCTTCTCTTAGAACTACTAAATAAATTGTACTCGTAA 5892 0.4352 MEDGDIRDSGAIDDGQEVTRSSPSYWLDACEDISCDLIHFDDGSIVSEQVDNNLIQDGLVNDFFGGIDSILDSIKNGSGLPVATETENGNQDFALALQAEISDQKDNIGKNGFAGEKHGRAVEVWEHSEAESNGYKVSNVNEEARTLGDSKENGGGDLSREHHVDGEERFGKRARLGGYKNERLYPGRGNYQPKERERCPNRKRPREWDEVDRKEKDSVRRRENFNGCGRRDVRDRDWRDREKGYWERDKSGSNDMVFRYGTWEADRYREGKVANDTRQECTGKIETKTEEPKERVPEEKARKYQLDVLEQAKQRNTIAFLETGAGKTLIAVLLMKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGCQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMETINLLILDECHHAVKKHPYSLVMSEFYHMTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTITDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLSALQNDERANYQLDVKFQESYLNKLVSLLQCQLLEGAVSDKNAGVSDSECRMAQGGSEADDIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLGFVKCASLIGHNNSQEMRTSQMQDTIARFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLKNARDSEETLRREAIERTDLSHLKDTSRLISVDTRPGSVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKTGGPAEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEREKDEQNDEGDPLPGTARHREFYPEGVADVLKGEWILSGKDACSYSKVLHLYMYAVMSENIGYSKDPFLTQVSDFAVIFGNELDAEVLSMSMDLFIARTMTTKASLVFRGSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPMVSDKPLDPMNQIDWHLVETVIETDAWKTPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKPHPTYGIRGAVAQFDIVKASGLVPNRQAVQMQKHINKTAQGKLVMADTCTNAEDLIGRIVTAAHSGKRFYVDSIRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSENEIESEEAHDKTYYVFLPPELCLMHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMINYPVQSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMILYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTRDGESSLFDQEGLSPKTEKMSHLSDGFEDDEMEDGELESDSSAYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDKMECARKANTVPESILRSVNFDALEGVLNINFRDKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHSLHIHLRHGSSALEKQITEFVKEVQEELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSSRDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRACRIGNLATVEVFIDGVQVGAARNPQKKMAQKLAARNALAALKEKEVATKTKEKDDENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKLYS 1963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0283 1963 CDD SF2_C_dicer 701 831 - -
Lele44g0283 1963 Gene3D - 1891 1961 - -
Lele44g0283 1963 SMART DRBM_3 1886 1959 IPR014720 -
Lele44g0283 1963 SMART DRBM_3 1798 1859 IPR014720 -
Lele44g0283 1963 SMART riboneu5 1638 1794 IPR000999 GO:0004525|GO:0006396
Lele44g0283 1963 SMART riboneu5 1417 1602 IPR000999 GO:0004525|GO:0006396
Lele44g0283 1963 Pfam PAZ domain 1260 1398 IPR003100 GO:0005515
Lele44g0283 1963 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 896 991 IPR005034 GO:0016891
Lele44g0283 1963 MobiDBLite consensus disorder prediction 1861 1883 - -
Lele44g0283 1963 FunFam Endoribonuclease Dicer 1 1259 1376 - -
Lele44g0283 1963 MobiDBLite consensus disorder prediction 146 167 - -
Lele44g0283 1963 SUPERFAMILY dsRNA-binding domain-like 1753 1860 - -
Lele44g0283 1963 CDD RIBOc 1639 1794 IPR000999 GO:0004525|GO:0006396
Lele44g0283 1963 SUPERFAMILY dsRNA-binding domain-like 1889 1959 - -
Lele44g0283 1963 SMART helicmild6 737 823 IPR001650 -
Lele44g0283 1963 ProSiteProfiles Ribonuclease III family domain profile. 1421 1582 IPR000999 GO:0004525|GO:0006396
Lele44g0283 1963 Pfam Type III restriction enzyme, res subunit 307 467 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lele44g0283 1963 MobiDBLite consensus disorder prediction 181 215 - -
Lele44g0283 1963 ProSiteProfiles Ribonuclease III family domain profile. 1623 1771 IPR000999 GO:0004525|GO:0006396
Lele44g0283 1963 Pfam Dicer dimerisation domain 896 984 - -
Lele44g0283 1963 SMART ultradead3 297 500 IPR014001 -
Lele44g0283 1963 Gene3D - 694 859 IPR027417 -
Lele44g0283 1963 ProSitePatterns Ribonuclease III family signature. 1658 1666 IPR000999 GO:0004525|GO:0006396
Lele44g0283 1963 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1797 1860 IPR014720 -
Lele44g0283 1963 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1885 1960 IPR014720 -
Lele44g0283 1963 Gene3D paz domain 1239 1384 - -
Lele44g0283 1963 CDD RIBOc 1417 1600 IPR000999 GO:0004525|GO:0006396
Lele44g0283 1963 CDD DEXHc_dicer 300 499 - -
Lele44g0283 1963 SUPERFAMILY PAZ domain 1260 1378 IPR036085 GO:0005515
Lele44g0283 1963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 834 IPR027417 -
Lele44g0283 1963 FunFam Endoribonuclease dicer-like 1 1618 1792 - -
Lele44g0283 1963 MobiDBLite consensus disorder prediction 189 215 - -
Lele44g0283 1963 Pfam Helicase conserved C-terminal domain 704 821 IPR001650 -
Lele44g0283 1963 Pfam Ribonuclease III domain 1435 1582 IPR000999 GO:0004525|GO:0006396
Lele44g0283 1963 Pfam Ribonuclease III domain 1658 1770 IPR000999 GO:0004525|GO:0006396
Lele44g0283 1963 MobiDBLite consensus disorder prediction 1515 1549 - -
Lele44g0283 1963 FunFam Endoribonuclease dicer-like protein 1400 1594 - -
Lele44g0283 1963 CDD DSRM_DCL_plant 1891 1952 - -
Lele44g0283 1963 FunFam Endoribonuclease dicer-like protein 296 536 - -
Lele44g0283 1963 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 485 IPR014001 -
Lele44g0283 1963 MobiDBLite consensus disorder prediction 981 1009 - -
Lele44g0283 1963 PANTHER DICER-RELATED 1251 1864 - -
Lele44g0283 1963 Gene3D Dicer dimerisation domain 891 994 IPR038248 -
Lele44g0283 1963 FunFam endoribonuclease Dicer homolog 1 1891 1960 - -
Lele44g0283 1963 Gene3D Ribonuclease III domain 1617 1792 IPR036389 GO:0004525|GO:0006396
Lele44g0283 1963 Gene3D Ribonuclease III domain 1400 1596 IPR036389 GO:0004525|GO:0006396
Lele44g0283 1963 Gene3D - 1795 1873 - -
Lele44g0283 1963 FunFam Endoribonuclease dicer-like 1 695 857 - -
Lele44g0283 1963 Gene3D - 295 539 IPR027417 -
Lele44g0283 1963 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 868 IPR001650 -
Lele44g0283 1963 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1885 1958 - -
Lele44g0283 1963 SUPERFAMILY RNase III domain-like 1622 1793 IPR036389 GO:0004525|GO:0006396
Lele44g0283 1963 SMART PAZ_2_a_3 1242 1402 IPR003100 GO:0005515
Lele44g0283 1963 ProSiteProfiles PAZ domain profile. 1239 1378 IPR003100 GO:0005515
Lele44g0283 1963 SUPERFAMILY RNase III domain-like 1394 1600 IPR036389 GO:0004525|GO:0006396
Lele44g0283 1963 MobiDBLite consensus disorder prediction 984 1009 - -
Lele44g0283 1963 MobiDBLite consensus disorder prediction 1861 1880 - -
Lele44g0283 1963 FunFam Endoribonuclease dicer-like 1 891 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0283 Lele-ChrLele44 2053465 2062989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0283 720 863 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 1.38e-06 51.2