Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0270 ATGTCTCATCCAAGGCAATTCCAGATGGTGGGTGGTTCTAACAATCCTCCTGGGCATTACAATGACACAGCTTTTACTAAAATCTTTGTTGGTGGATTGGCTTGGGAGACTCAAAGGGATACGATGAGGAGATATTTTGAGCAGTTCGGTGAGATCCTTGAAGCTGTTGTTATTACAGACAAGAACACAGGGAGATCCAAGGGTTATGGCTTTGTTACATTTAAGGATCCAGAAGCAGCCATGAGAGCATGTCAGAATCCATCTCCAGTTATTGATGGGAGAAGAGCAAACTGCAATCTTGCATCTCTTGGAGCAAACAAGAATCGCCCACCAACACCTCAACATGGAACAGGAAGGTTCAGACAAGGACCTGGAGGACTGGTGGCTACTACACCTGCATACCATGGCTCTTCTTCTTCTACATTTTCCCATCAGCCCTCTGGCCAATATACTTTTCCTTATTCAACTTACGGGTATTCTGGATATTCACAAGACACCATGTATCCAATGAACTATTATAATGTATATGGAGGTCAACAGTTTTCACCATATTACCCTTCAAGTGGGGCATCTGGGCCACCAGGACTGGTCCATAATATTTACCCTTTCTATGCTCAATATGCTCACACTAGTAGCCAGGCTCAAGGCTTTGGACTTCAATATCCTCATCAAATGCTACAATTCCCATTTCTCTCTCATCAGCACTATGCTGGCTCCACTGGGATCCTCTCTTTTCCTTCTTCTTCAATGCCATTGTCAACTACTACAACTAGTGCAGTTGCAACAACGACGACAAACACAGGGACGACAACAACAACATCAACAACAGTAGCAGCAGCAGCAACTGGGGCAGGTGGTTCTTCACAAGCTTCTGGAACAGCTTCTGAACAAAAATCTTCAATTTAG 906 0.4415 MSHPRQFQMVGGSNNPPGHYNDTAFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTPQHGTGRFRQGPGGLVATTPAYHGSSSSTFSHQPSGQYTFPYSTYGYSGYSQDTMYPMNYYNVYGGQQFSPYYPSSGASGPPGLVHNIYPFYAQYAHTSSQAQGFGLQYPHQMLQFPFLSHQHYAGSTGILSFPSSSMPLSTTTTSAVATTTTNTGTTTTTSTTVAAAATGAGGSSQASGTASEQKSSI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0270 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Lele44g0270 301 PANTHER BOULE-RELATED 15 267 IPR037366 -
Lele44g0270 301 MobiDBLite consensus disorder prediction 103 123 - -
Lele44g0270 301 CDD RRM_RBM24_RBM38_like 26 101 - -
Lele44g0270 301 FunFam RNA-binding protein 24-B isoform X1 13 119 - -
Lele44g0270 301 Gene3D - 3 121 IPR012677 -
Lele44g0270 301 SUPERFAMILY RNA-binding domain, RBD 19 126 IPR035979 GO:0003676
Lele44g0270 301 SMART rrm1_1 27 99 IPR000504 GO:0003723
Lele44g0270 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Lele44g0270 301 MobiDBLite consensus disorder prediction 281 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0270 Lele-ChrLele44 1948414 1950290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0270 22 102 C2H2 Transcription Factor Family AT2G19380 45.679 1.01e-16 78.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g0162 03 867813 869201 Lele44g0270 44 1948414 1950290 ECH
Lele44g0270 44 1948414 1950290 Lele44g0270 44 1948414 1950290 ECH
Lele01g0154 01 892205 893528 Lele44g0270 44 1948414 1950290 hybridization
Lele02g0160 02 884442 885897 Lele44g0270 44 1948414 1950290 hybridization