Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0267 ATGAGCATCTCCGTCAATGGACAATCCCAGGTGCCTCCTGGTTTTCGATTCCATCCAACCGAAGAGGAGCTTTTGCAGTACTACCTCAGGAAGAAGGTCTGCTACGAGATGATCGACCTCGACGTTATTCGCGATGTCGATCTCAACAAGCTCGAGCCTTGGGATATACAAGAGAAGTGCAAAATTGGAACCACCCCACAGAACGATTGGTACTTCTTTAGCCACAAAGACAAGAAGTATCCCACCGGAACTCGAACGAACCGGGCCACGGCTGCCGGATTCTGGAAGGCGACGGGACGGGATAAGGTGATATACGGCAACGGAAAGAGGATTGGGATGAGAAAGACGCTGGTTTTCTACAAAGGACGTGCCCCTCATGGCCAAAAGTCTGATTGGATCATGCATGAGTATAGGCTTGAAGATAACAACACCAACACCGAGACCAGCATTGTTACGAATGTAATAGGAGATGGAGCACAGGAAGAAGGGTGGGTGGTTTGCAGGATATTCAAGAAGAAGAACCATCTCAAAACCCTAGAGATTCCCTTGGCTTCGTCCATTACAGAGGAAACAATCAGAAGCCACGACCACGACTCCATGTTCGATCCTTGTGACGACGACGAGGGAACTCTTGAGCAAATTCTCGAGCAAATGGGAAGAAGCTGTTGCAAAGAAGAAGAAGAACAAAACGGTCCCACTAACACCAACAACAACAACCGAAGAATCACCAGACCGTTTGGCGACACTTTCATGAACAACAACAGCAGCAACCTTAACAATGGCTACTTCCACCATGACAGGCTCTCGAAGCTTCCTCGCTTAGAAAGCCCAAATTCTAATAATTATGGGTACCACCCTATCATTGAAGGAGCATATGGCGACGGGGGCGGCGGCGAGCACAGCTTTGTTAATCATCAGACGGAATCGGCAACTTCATCTGTTAATGGCGGTCTTATCACCAACTGGGCAGCACTGGATCGGCTGGTAGCTTCGCAGCTGAATGGCCAAACAGAGACTTGTCGGAGCCTACCTTGCTTCAATAATAATACCACCGGAGAGCCCACCACCACCATGGGCTATGGCTTGAGCGAGCATGATCTGCAACTTCTTCCGACCCTACGATCTTCGTCACTTTCATCAATAACATCATCATCAGCAGCCCACAACAGTGGAGCTAATTACGATTACACCAACGAGATTGACCTCTGGAACTTTGCCCGATCCGCATCATCGTTAGTATCAGGCTCCGAACCACTATGCCACGTGTTCAACACATCATCAGTGTAG 1287 0.4895 MSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVCYEMIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYGNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLEDNNTNTETSIVTNVIGDGAQEEGWVVCRIFKKKNHLKTLEIPLASSITEETIRSHDHDSMFDPCDDDEGTLEQILEQMGRSCCKEEEEQNGPTNTNNNNRRITRPFGDTFMNNNSSNLNNGYFHHDRLSKLPRLESPNSNNYGYHPIIEGAYGDGGGGEHSFVNHQTESATSSVNGGLITNWAALDRLVASQLNGQTETCRSLPCFNNNTTGEPTTTMGYGLSEHDLQLLPTLRSSSLSSITSSSAAHNSGANYDYTNEIDLWNFARSASSLVSGSEPLCHVFNTSSV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0267 428 Gene3D NAC domain 20 177 IPR036093 GO:0003677|GO:0006355
Lele44g0267 428 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 252 - -
Lele44g0267 428 ProSiteProfiles NAC domain profile. 11 172 IPR003441 GO:0003677|GO:0006355
Lele44g0267 428 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Lele44g0267 428 SUPERFAMILY NAC domain 7 172 IPR036093 GO:0003677|GO:0006355
Lele44g0267 428 FunFam NAC domain-containing protein 20 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0267 Lele-ChrLele44 1905957 1907495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0267 1 426 NAC Transcription Factor Family AT2G46770 53.333 1.17e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele44g0267 NAM 1.6e-35 No_clan