Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0225 ATGAAGATTGAGGTGGGTGTAGGAGGAGAAGGTATGTTTTGGAACGAAGACGAACGAGACATGGTGGCGGCGGTTCTCGGCGCTCGAGCTTTCGATTACTTGGTGAACCACTCGGTTTCAAATGATAATCTGTTAATGGCCGTAGTGACCGACGAGAATCTCCAGAAGAAGCTCTCGGATCTCGTGGAGCTTCCAAACGTATCGAATTTCACCTGGAACTACGCCATTTTCTGGCAAATTTCCCAGTCAAAATCCGGCGAATGGGTCTTAGGTTGGGGCGATGGGTGTTGCAGAGAACCCGATGAAGCAGAAGAAGACGGATTAAAAGCGATTCTCAGTCTTCGCATGGAAGACGAAGTTCAGCAAAGGATGAGAAAGAGAGTGTTGCAGAAGCTTCACGCAACCTTTGGTGGTTCAGAAGAAGACAATTACGTTCATGGATTAGACCGTGTTACTGATACTGAGTTGTTCTTTCTGGCATCTATGTACTTCTCTTTCCCTCGTGGCCATGGCGGTCCAGGTAAGTGTCTTGCGTCTGGTAAACATTTATGGCTCACAAATGCACAGAAATCTGCAGTTGATTATTGCGTGAGATCGTTTCTGGTTAAATCCGCCGGAATCCAGACCGTCGTTTTGATCCCTACTGATATGGGAGTGGTGGAACTGGGTTCTGTGACGGTGGTGAAGGAGAACTTAGAATTGCTGCAGGCAATCAAATCGGAGTTTTCCATTGAATCTACATTTTCAAGGGCTAAGTCGTCAATTCCACCACCGACTCCTGCTCCTGCTACTGTTCCTCCGGTTGCGGTGACGGCGGAGAAAAGAGATGAACTTACCATCTTTCCGGTTTTAACAGTTTCTGACAAAGTTGAAGTAGTTCCAAAGATTTTCGGGCAGGATTTGAACAAGACGAACCCGGTTCGAACCACCCAGTTCAGAGAGAAACTTGCTATTAGGAAAATGGAGGACAGGCCATGGTTAGGAGGAGGAGGAGGAGGTCAAGGTCGTCATCATCATCACCACTCCAATGGGGTTCATCTTCATCCTCATCCTCATCGGAATGGTGTTCATCCTTCAAGTTGGACAACGGCAGCTAATAGTAACTGCCCTGTTGAAACTTATGTTTCTAGATCGTCGGCGGTGACCAGCAATGTGCCGGTTCTTGACCCTGTTAATCGCGTTAACAACTATAACAATCAGCCGCCGCAAAGGAAAGCTCCATTGCAGATTGATTTCTCAGGAGCTACTTCCAGGTCTGCTGTGACGGCTGTGAGACCAAATGGTGGTGAATCAGAGCAAGCTGATGTTGATGCCGCTTCATTCAGGGAGGGACTGGCACCGGGAGGGGGAGGGGCTGATGAACGGCGGCCGAGGAAGCGAGGAAGAAAGCCTTCGAACGGCAGGGAAGAACCTCTGAACCATGTGGAAGCTGAGAGACAAAGGCGTGACAAACTTAACCAACGATTCTATGCTTTAAGAGCTGTGGTGCCTAATATCTCCAAGATGGACAAAGCCTCCTTGCTAGGAGACGCCATTGCTTATATCAATGAGCTTCAGGCGAAACTCAAGGCAATGGAAACTGAAAGAGAGATCAGCTTCGGAGGAAGCACTTCGAATGATCATCAATCATTAGATCCCAACAATGTTCAACAATCTCTCCCTCAAGTGGAAGTCCACGCACATCACGATGGGGTCGTCGTGAGGGTGATATCGCCGATCAATTCCCACCCGGTTTCGACAGTGATCAGAGCGCTGAAAGGGGCCCAAGTGAATGTCGTTGATTCGAAGCTTGCTGCCCCGAACGAAGCCGTGTTGCACACGTTCGTTATCCAGCCTCAAGGAGCTGATCAGCAGCTGACAAAAGAAAAGTTGATTGCTGCATTTTCCCGCGAATCGAATTCGTCGCAGCCATTTTCGTTGACCGGCCATTAA 1932 0.4871 MKIEVGVGGEGMFWNEDERDMVAAVLGARAFDYLVNHSVSNDNLLMAVVTDENLQKKLSDLVELPNVSNFTWNYAIFWQISQSKSGEWVLGWGDGCCREPDEAEEDGLKAILSLRMEDEVQQRMRKRVLQKLHATFGGSEEDNYVHGLDRVTDTELFFLASMYFSFPRGHGGPGKCLASGKHLWLTNAQKSAVDYCVRSFLVKSAGIQTVVLIPTDMGVVELGSVTVVKENLELLQAIKSEFSIESTFSRAKSSIPPPTPAPATVPPVAVTAEKRDELTIFPVLTVSDKVEVVPKIFGQDLNKTNPVRTTQFREKLAIRKMEDRPWLGGGGGGQGRHHHHHSNGVHLHPHPHRNGVHPSSWTTAANSNCPVETYVSRSSAVTSNVPVLDPVNRVNNYNNQPPQRKAPLQIDFSGATSRSAVTAVRPNGGESEQADVDAASFREGLAPGGGGADERRPRKRGRKPSNGREEPLNHVEAERQRRDKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKAMETEREISFGGSTSNDHQSLDPNNVQQSLPQVEVHAHHDGVVVRVISPINSHPVSTVIRALKGAQVNVVDSKLAAPNEAVLHTFVIQPQGADQQLTKEKLIAAFSRESNSSQPFSLTGH 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0225 643 MobiDBLite consensus disorder prediction 389 481 - -
Lele44g0225 643 SMART finulus 475 524 IPR011598 GO:0046983
Lele44g0225 643 MobiDBLite consensus disorder prediction 334 353 - -
Lele44g0225 643 CDD bHLH_AtAIB_like 466 531 - -
Lele44g0225 643 Gene3D - 462 532 IPR036638 GO:0046983
Lele44g0225 643 MobiDBLite consensus disorder prediction 452 481 - -
Lele44g0225 643 PANTHER MYC 42 627 IPR045084 GO:0003700|GO:0006355
Lele44g0225 643 Coils Coil 508 528 - -
Lele44g0225 643 MobiDBLite consensus disorder prediction 389 426 - -
Lele44g0225 643 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 532 IPR036638 GO:0046983
Lele44g0225 643 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983
Lele44g0225 643 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 242 IPR025610 -
Lele44g0225 643 MobiDBLite consensus disorder prediction 323 363 - -
Lele44g0225 643 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0225 Lele-ChrLele44 1496073 1498004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0225 12 643 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 47.626 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele44g0225 bHLH-MYC_N 3.3e-55 CL0161