Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0209 ATGATACTTAAGCGGACAATGAAAATTGAAATGCCGAACCTGAAACGGTGTAAGCTAGAGGAGCAGGATGGCGAGGAGTATGGGTGTACATCTGTTCCGAAGAAACGGAAGGTTAATGAGTTTTATTCTCTTGGTATGCCGGGCGAGGCTGAAGGTTTCAGCAGCGGTTCAGGGTCTTGGTGCAGTGAAGGATCGCATTGGGCTAGTGAGGTTCTATCGAATTCAAATTCTACGCCATTGAATAGTAGAACAGCAATGGAGCAAGGTTCTGAAAGGATTCGGCCTCCACTATTGCGGTCGTCTCGTGGTCGCTCTCAAACGCTTCCATCGAGGTTCAATGATTCTGTTCTCGGTACATGGAAGAACCGGGGAATCAAAGTGGAGGACCCAGACTCCAGCTTTGAAGATGATAATATTTTAGTTGAAGATAGGGTGGGGGTTAGTGGATTGGGATTTGTAAAACAGGGTCAGGGAAATAACTATGGCTCCAAAAAGTCAAAGTATTATTCATATCCCAACATGGATGGGGAGGAATCAGGATTCGACGACTCAGGTTTAAACAATTTTGACCACCGGAAGCTTACAAATTCTGTTAGTACTACGAGAACATCAATTAATGGAAATCGTTCTTCAGCAGTTAAAACCGAGAGTTATACGTCTGGTTTAAGTTTTGAGGGTGTGGACCAAAAGCTCGATCGAAATGCTGCAAAAAGGGAAGATATCTATAAACCGGAGGATTTTGCTTTGGGTGACATCGTTTGGGCTAAGTGTGGAAAGAGATATCCAGCATGGCCTGCTGTAGTGATTGATCCTATCTTGCAAGCTCCGAAGTCCGTTCTGAGCTGTTGTGTTCCTGGTGCAATTTGCGTGATGTTTTTTGGGTATTCAAAAAATGGAAAGCAAAGGGACTACGCATGGGTGAAGCAGGGAATGATATTCCCCTTCGCGGAATTCATGGCCAGATTCGAGGGGCAGACTCGGCTGTACAAGAGCAAACCGAGTGACTTTCAGATCGCACTGGAGGAGGCATTGTTGGCAGAAGATAGTTTTCTGGATTCACATATGGGAGCTGAGCAGATAACAAATGCAGAAGCCCATCCCAATGGGTTTATGGAGGCTACAAGTTCATATGTTGATCCAGAATATGGCTCTCAAGACCAGGATATGAGACCTTGTGCTGGCTGTGGTCTGACTTTGCCCTGCAAAACCATGAAGAAGATGAAGGATTCCAATTCTTCAGCTCAACTTTGTTGCAAATTTTGTGACAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTGTGTTGTGACGGTTGTAATGTTTGGATTCATGCTGAATGTGCTAAAATATCCAGCAAACTTTTTAAGGATCTGGAACATACAGATTACTATTGTCCAGATTGCAAAGCAAATTTCAACTGTAAATTTTCTGCATCACAAACATGCAAGCCAAAAATTAAATCAACAGAAAATAGCCAAAAGCCCGTTGTACCTGATAAGGTAACAGTGGTGTGCAACGGCATGGAAGGGTATTACATTCCAAAGCTTCATCTAGTCATGTGCAAGTGTGGCTCATGTGGGGTGCGAAAGCAGACACTGAGTGAATGGGAACGACATACGGGTTGCAGAGCTAAAAAATGGAAATATAGTGTGAAAGTAAAGAGTACAATGCTTCCTCTTGAAAAATGGATCCACGAAAACAATACACAAGGTGGAGTTTCTATGCAGTTAGATCAACAACAGGTACTTGCCTTTCTGCAAGAGAAGTATGAACCAATTTATCCAAAGTGGACTACAGAAAGATGTGCCGTTTGTAGATGGGTTGAAGATTGGGATGATAACAAAATCATCATCTGCAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGAGCAAAGAATGTCAAGGATTTTACTTCTTGGGTCTGTAGAGTGTGCGAAACCCCAGATGTTGAGAGAGAGTGTTGCCTTTGTCCTGTTAAAGGTGGAGCTCTAAAGCCAACTGATGTTGAGATGCTGTGGGTTCATGTCACGTGTGCTTGGTTCCGGCCTGAAGTTGGATTCTCAAACCATGAGACAATGGAGCCCGCCTTTGGAATCCTTAAAATTCCTCCAAGTTCCTTTTTGAAGACCTGTGTTATCTGTAAACAAAGCCATGGCTCCTGTGCAAGTTGTTGCAAGTGTGCTACTCATTTTCATGTGACGTGTGCATCTAGGGCCGGATACAGCATGGAATTGCATTCTATGGAGAAGAATGGGGTTCAGATAACAAAGAAGTTAATATATTGTGCATTCCACAGGCTTCCAACCCCAGATTCCGTAATGGTTATACACACTCCCTTGGGGGTCTTCTCTCCCAGAACTTCCCTGCAAAATCATAAGGGATGCTTCAGGGGTTCGAGGCTGGTATCATCAAAAAACATAGAACTTCTTGAATCTTCATCCTCTGAGACTAATGAATTTGAACCATTGTCTGCTGCAAGATGTCGTGTTTATAGAAGATCTTCCAAGAAGGCTGATGAACCAATAATACATTTAGTGAGGGGACCAAGTCGTCATTTATTAAGTTCTATAATTCAATTGAACAGCTACAAGGACTCGGAAGATTCTAAAGTATTTACTTCGTTCAAGGAACGTCTTCACCATTTGCAGAAAACTGAAAATCATCGAGTTTGCTTTGGAAAATCGGGTATACATGGATGGGGTCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGCTGAGTACCGTGGTGAGCAGGTAAGACGAAGTGTTGCTGATATGAGGGAGGCTAAGTATCGTTCAGAAGGAAAAGACTGTTATCTGTTCAAGATCAGTGAAGAAGTGGTCATCGATGCTTCACATAGGGGAAATATAGCACGCCTGATAAACCACTCTTGCATGCCTAACTGCTATGCAAGGATTATGAGCATGGGCGCCGAGGAGAGCCGGATTGTTCTTATTGCCAAGACCCAGGTTTCAGCTGGGGAAGAACTAACGTATGATTACTTGTTTGATCCGGACGAGCGGGATGAACTGAAAGTTCCTTGCCTTTGTAAAGCCCCCAATTGTAGGAAATTTATGAATTAG 3138 0.4324 MILKRTMKIEMPNLKRCKLEEQDGEEYGCTSVPKKRKVNEFYSLGMPGEAEGFSSGSGSWCSEGSHWASEVLSNSNSTPLNSRTAMEQGSERIRPPLLRSSRGRSQTLPSRFNDSVLGTWKNRGIKVEDPDSSFEDDNILVEDRVGVSGLGFVKQGQGNNYGSKKSKYYSYPNMDGEESGFDDSGLNNFDHRKLTNSVSTTRTSINGNRSSAVKTESYTSGLSFEGVDQKLDRNAAKREDIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGYSKNGKQRDYAWVKQGMIFPFAEFMARFEGQTRLYKSKPSDFQIALEEALLAEDSFLDSHMGAEQITNAEAHPNGFMEATSSYVDPEYGSQDQDMRPCAGCGLTLPCKTMKKMKDSNSSAQLCCKFCDKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWIHAECAKISSKLFKDLEHTDYYCPDCKANFNCKFSASQTCKPKIKSTENSQKPVVPDKVTVVCNGMEGYYIPKLHLVMCKCGSCGVRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWIHENNTQGGVSMQLDQQQVLAFLQEKYEPIYPKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVGFSNHETMEPAFGILKIPPSSFLKTCVICKQSHGSCASCCKCATHFHVTCASRAGYSMELHSMEKNGVQITKKLIYCAFHRLPTPDSVMVIHTPLGVFSPRTSLQNHKGCFRGSRLVSSKNIELLESSSSETNEFEPLSAARCRVYRRSSKKADEPIIHLVRGPSRHLLSSIIQLNSYKDSEDSKVFTSFKERLHHLQKTENHRVCFGKSGIHGWGLFARRDIQEGEMVAEYRGEQVRRSVADMREAKYRSEGKDCYLFKISEEVVIDASHRGNIARLINHSCMPNCYARIMSMGAEESRIVLIAKTQVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0209 1045 Gene3D - 236 353 - -
Lele44g0209 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 486 IPR013083 -
Lele44g0209 1045 ProSiteProfiles Zinc finger PHD-type profile. 612 663 IPR019787 -
Lele44g0209 1045 SUPERFAMILY FYVE/PHD zinc finger 427 489 IPR011011 -
Lele44g0209 1045 Pfam PHD-finger 627 661 - -
Lele44g0209 1045 SMART set_7 903 1026 IPR001214 GO:0005515
Lele44g0209 1045 MobiDBLite consensus disorder prediction 72 88 - -
Lele44g0209 1045 ProSiteProfiles SET domain profile. 903 1020 IPR001214 GO:0005515
Lele44g0209 1045 FunFam Histone-lysine N-methyltransferase 877 1045 - -
Lele44g0209 1045 SMART PWWP_4 247 316 IPR000313 -
Lele44g0209 1045 Pfam PWWP domain 250 345 IPR000313 -
Lele44g0209 1045 ProSitePatterns Zinc finger PHD-type signature. 615 660 IPR019786 -
Lele44g0209 1045 CDD PHD_ATX3_4_5_like 614 660 IPR042011 -
Lele44g0209 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 782 IPR013083 -
Lele44g0209 1045 ProSiteProfiles PWWP domain profile. 249 318 IPR000313 -
Lele44g0209 1045 ProSiteProfiles Post-SET domain profile. 1029 1045 IPR003616 -
Lele44g0209 1045 ProSiteProfiles Extended PHD (ePHD) domain profile. 666 781 IPR034732 -
Lele44g0209 1045 CDD SET_SETD1-like 892 1041 - -
Lele44g0209 1045 Pfam PHD-zinc-finger like domain 668 780 - -
Lele44g0209 1045 ProSiteProfiles Zinc finger PHD-type profile. 428 484 IPR019787 -
Lele44g0209 1045 PANTHER PHD FINGER PROTEINS 12 1022 - -
Lele44g0209 1045 CDD PHD_TCF19_like 431 481 - -
Lele44g0209 1045 Pfam PHD-finger 430 483 IPR019787 -
Lele44g0209 1045 MobiDBLite consensus disorder prediction 72 110 - -
Lele44g0209 1045 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1045 IPR025780 -
Lele44g0209 1045 Gene3D SET domain 840 1045 IPR046341 -
Lele44g0209 1045 SMART PostSET_3 1029 1045 IPR003616 -
Lele44g0209 1045 Pfam SET domain 914 1019 IPR001214 GO:0005515
Lele44g0209 1045 SUPERFAMILY FYVE/PHD zinc finger 613 677 IPR011011 -
Lele44g0209 1045 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 663 IPR013083 -
Lele44g0209 1045 SUPERFAMILY SET domain 896 1042 IPR046341 -
Lele44g0209 1045 SMART PHD_3 614 661 IPR001965 -
Lele44g0209 1045 SMART PHD_3 430 482 IPR001965 -
Lele44g0209 1045 SMART PHD_3 725 781 IPR001965 -
Lele44g0209 1045 SUPERFAMILY Tudor/PWWP/MBT 240 355 - -
Lele44g0209 1045 FunFam Histone-lysine N-methyltransferase 664 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0209 Lele-ChrLele44 1367897 1375892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0209 383 455 EF-hand Containing Proteins AT5G28340 57.534 3.57e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele44g0209 zf-HC5HC2H_2 4.7e-28 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1192 41 20909493 20917015 Lele44g0209 44 1367897 1375892 hybridization