Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0193 ATGGACCAACAGCGAAGAAGAAGACAGCACAATACTACTACCTCTGACTCTGAAGAGGTGAGCAGTATCGAGTGGGAGTTCATAGACATGTCAGAGGAAGAAGAAGATCTCATCCACAGAATGTACAAACTCGTTGGAGACAGATGGAGTCTGATAGCTGGTAGAATCCCAGGACGAAAAGCTGAAGAGATTGAGAGGTTTTGGATTATGAAGCATGCGCAAATGTTTGCTACCAGAAGAGAAAATCTTGGCACATATAAATAA 264 0.428 MDQQRRRRQHNTTTSDSEEVSSIEWEFIDMSEEEEDLIHRMYKLVGDRWSLIAGRIPGRKAEEIERFWIMKHAQMFATRRENLGTYK 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0193 87 CDD SANT 30 68 IPR001005 -
Lele44g0193 87 FunFam MYB-like transcription factor 29 71 - -
Lele44g0193 87 Gene3D - 31 84 - -
Lele44g0193 87 MobiDBLite consensus disorder prediction 1 21 - -
Lele44g0193 87 SMART sant 26 74 IPR001005 -
Lele44g0193 87 Pfam Myb-like DNA-binding domain 31 69 IPR001005 -
Lele44g0193 87 SUPERFAMILY Homeodomain-like 31 69 IPR009057 -
Lele44g0193 87 ProSiteProfiles Myb-like domain profile. 31 68 IPR001005 -
Lele44g0193 87 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 29 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0193 Lele-ChrLele44 1235822 1237559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0193 30 82 MYB Transcription Factor Family AT5G52600 50.943 7.75e-14 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele44g0193 Myb_DNA-binding 1.2e-06 CL0123