Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0178 ATGAGAGAAACTAAGATAATCACGAACAAGTTTGTGAAATCGGAGTTTCTGAACGGAGCTCCGAAGGTTGTCCGGATCAGTGTCACAGATCACTACGCGACTGACACATCAAGCGGCGATGACGAATATGAACACTTCCAACCCAGAAGAATGAGGAGGATCGTTAACGAAATCAGAATCGAGAAAAGGTCCAATTTTCTGGCGAACAGAGAGGCTTATGGAGGAGGTATGGGCACCTCTTGTTCGAAGCAGAGGTGCAGAAACAACACCTCCGGCATGGCGCGACCCGGAAAATCTGAGCAGGTCGAAGCGATGGTAAAGAAGTACCGCGGTGTTCGACTGCGGCCCTGGGGACGGTGGTCCGCGGAGATCAGAGATCCGGCGCGTCGACAAAGGCTGTGGCTGGGCACTTTCGACACGGCGGAAGAGGCCGCCGTGTCGTACGACAGAGCAGCTATTCGTATTAAAGGTGCTAATGCATTGACAAATATTCTCCAACCACCACCTAAAATGGCCGAAACCGTCGAAGAATGCGAATCAACCTCAATGGACAACAACATCGAGTTCTTTCAAGAGCCTCACGTGTCTTCCCCAACCTCTGTGCTGAGGTTCCAGTCTCTAGAAGAAAAGAAAACAGAGCCCAGAGAAGTAGAAGTAGAAGAAGCAGAAGCTGAAGCAGAGCCATATTTCCAAGACAGTAATCTATGGTTCTCATCAGATTCTCCATTTTCTGATAGATATTCAGAATGTGAAGTCCCTCTCCCAATGTTCTTCGACCAGTTTACTTCAAGTGACAATTTATATTTCAGAGACAGTCCATTCCACCTGGAACAAGATTTTGAATCGTGTAAATGGGACGTAGACAGCTACTTTCAAGAAGAAGACACTACTGAAAACTGGGTTTGA 906 0.4757 MRETKIITNKFVKSEFLNGAPKVVRISVTDHYATDTSSGDDEYEHFQPRRMRRIVNEIRIEKRSNFLANREAYGGGMGTSCSKQRCRNNTSGMARPGKSEQVEAMVKKYRGVRLRPWGRWSAEIRDPARRQRLWLGTFDTAEEAAVSYDRAAIRIKGANALTNILQPPPKMAETVEECESTSMDNNIEFFQEPHVSSPTSVLRFQSLEEKKTEPREVEVEEAEAEAEPYFQDSNLWFSSDSPFSDRYSECEVPLPMFFDQFTSSDNLYFRDSPFHLEQDFESCKWDVDSYFQEEDTTENWV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0178 301 MobiDBLite consensus disorder prediction 78 99 - -
Lele44g0178 301 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Lele44g0178 301 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Lele44g0178 301 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Lele44g0178 301 Gene3D AP2/ERF domain 107 165 IPR036955 GO:0003700|GO:0006355
Lele44g0178 301 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Lele44g0178 301 MobiDBLite consensus disorder prediction 81 96 - -
Lele44g0178 301 CDD AP2 107 163 IPR001471 GO:0003700|GO:0006355
Lele44g0178 301 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 226 - -
Lele44g0178 301 SUPERFAMILY DNA-binding domain 108 164 IPR016177 GO:0003677
Lele44g0178 301 FunFam Ethylene-responsive transcription factor 2 107 166 - -
Lele44g0178 301 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0178 Lele-ChrLele44 1105169 1106074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0178 3 271 AP2-EREBP Transcription Factor Family AT4G27950 38.435 5.56e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele44g0178 AP2 4.9e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele44g0178 44 1105169 1106074 Lele44g0178 44 1105169 1106074 ECH
Lele01g0222 01 1269962 1271008 Lele44g0178 44 1105169 1106074 hybridization
Lele02g0219 02 1220601 1221647 Lele44g0178 44 1105169 1106074 hybridization