Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0117 ATGGGCTTTCCGGTGGGATACACCGACGTCGTTTTACCAAATCTCTTCCTCCACACACTCTCGCTCCTCGGATTCATCCGCAACCTCATCTTCCTCCTCTTCCACTTTCTCGGCCTCTCCGATTTCCTCGAAACCGAGGTCGTCTGGTCCGAATCTCATGCTCGATTGCCCGACAGCCCCCCGGTGTCCGCGCTCCTGATCCGCGAATTCCTCCCTGTCGTCAAGTTCGGCGAGCTCCTCGCCGCTACCGCCGGCGGCGACACGCTGGAGAGTTGCGCCGTCTGCCTGTACGAGTTCGAGACGGAGGAGGAAATCAGGTGCTTGACCAATTGCAAGCACATTTTTCACCGGGCTTGTCTGGACCGTTGGATGGATCACGATCAGAAGACTTGTCCCTTGTGTAGGACCCCCTTTGTGCCCGATGATCTGCAGGATGATTTCTATCAACGGCTCTGGGCCGCTTCTGGAGTCTCTGATGTTTATGGAGACTACACTTCCCTGTGA 504 0.5655 MGFPVGYTDVVLPNLFLHTLSLLGFIRNLIFLLFHFLGLSDFLETEVVWSESHARLPDSPPVSALLIREFLPVVKFGELLAATAGGDTLESCAVCLYEFETEEEIRCLTNCKHIFHRACLDRWMDHDQKTCPLCRTPFVPDDLQDDFYQRLWAASGVSDVYGDYTSL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0117 167 CDD RING-H2 92 135 - -
Lele44g0117 167 SUPERFAMILY RING/U-box 91 141 - -
Lele44g0117 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 142 IPR013083 -
Lele44g0117 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 154 - -
Lele44g0117 167 SMART ring_2 92 134 IPR001841 -
Lele44g0117 167 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Lele44g0117 167 FunFam RING-H2 finger protein ATL73 67 142 - -
Lele44g0117 167 Pfam Ring finger domain 91 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0117 Lele-ChrLele44 714296 714799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0117 1 166 C3H Transcription Factor Family AT1G63840 51.149 1.88e-53 165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1280 41 21539874 21540377 Lele44g0117 44 714296 714799 hybridization
Lele42g1239 42 24480858 24481361 Lele44g0117 44 714296 714799 hybridization