Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0111 ATGGGAGGTTGCTGCTGCAGTGCCAGAAAACCTCATCTGCATGGAACGCCATGTCCACCGGCTTTGGAAGAGCATGAATCTTTAACTACTAATGCTGGTACTGCTGGTTCACTCACTGCCGGATTGCTGGTGAGTTTGGACCTTCAGGGGTCAACACCTGATGCTTTCCGGCCCCCTCCTGCACCATTGCCATATGATACGGTTTTGGGTTGTCCAGCATCAACTGATTCTGAGTCAGGCAGAGAAACAGTTAGTGTCAGTAGTTTTGCAACTTTAATTACATGTGAAGATATTGAAGACTCAGAATGCAAAGTTCAAGCTAATTCTATGCCTACGTCTCCAAGGAAGCCAGAATTAACAAAATCAAATGAATCTCATGTATTAGTGACAGAGGAAGAGGATGGTTGCCCAATTTGTCTTGAAGAATATGATGTTGAGAATCCTAAAACTCTGACCAAGTGTGAACACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAACGAAGTGACTCTTGTCCCATATGCGATCAGGAGATGATATTTGACCAGACATTGAATTAG 564 0.4397 MGGCCCSARKPHLHGTPCPPALEEHESLTTNAGTAGSLTAGLLVSLDLQGSTPDAFRPPPAPLPYDTVLGCPASTDSESGRETVSVSSFATLITCEDIEDSECKVQANSMPTSPRKPELTKSNESHVLVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0111 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 186 IPR013083 -
Lele44g0111 187 SUPERFAMILY RING/U-box 130 183 - -
Lele44g0111 187 MobiDBLite consensus disorder prediction 107 127 - -
Lele44g0111 187 Pfam Ring finger domain 136 176 IPR001841 -
Lele44g0111 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 32 184 - -
Lele44g0111 187 FunFam Putative E3 ubiquitin-protein ligase RHB1A 112 181 - -
Lele44g0111 187 ProSiteProfiles Zinc finger RING-type profile. 136 177 IPR001841 -
Lele44g0111 187 SMART ring_2 136 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0111 Lele-ChrLele44 665241 667437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0111 1 187 C3H Transcription Factor Family AT4G00335 57.068 4.53e-71 212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1286 41 21586587 21588743 Lele44g0111 44 665241 667437 hybridization
Lele42g1245 42 24527013 24529193 Lele44g0111 44 665241 667437 hybridization