Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0109 ATGAAAAAAAATTTAGGGGGCGAAATATGGGAAGTTGAGAGAAAGCCAAGGGCCAAGGTCAAGAAAGGTCACAAAAGAGTCATTGAAGAGAGCCCCACTCAAAATTTCTCTACACTCTGGATAGAGGATGAATCGGTTTCTGAAGGGCGTAATGTCCAAGTTGAAGGAGAACTAGATAGCAGTGGTGTTGAAGCTTTAGCTGGTAAGCTCCGGTTCTGTTGCGATCAAGTCTCTTATTGGTTTTTGAAAGAGAACTGCCCCCGACGTACTTCATCAATGCTTGGTAATGGGAAATCAGTGGATTTATATAAGCTCTTCAAGGTTGTCAAGGAGAACGGTGGGTATGATGCAGTCTCCAAAAACCGTTTATGGGATCTGGTGGGTGAACAATCTGGGTTGGGTACGAGCATTGGTTCGTTTGTGCAACTGATTTACAATAAGTACTTGATTACTTTAGAGATATGGCTAAAGCAAGCTGCTGATAATAAGATCTCTAACTGTAGTCTGGAGTTTAACAGAGTTGATTTTGGCAGGCATTTGATGGAGTTGCACGCAGAATTTGAGGGGTCCTTGTCGGATTGTAATGATGAAGAGTTGGGTGATGAGATGTGTCAACGTTCTGAGTTTAAAACTGAATATAAAAGCCAGGATGGTGAGGTGTTGTTCGATGCTAAGGGAGTGAAGAGCAGGTCTGGAGGGGCCAAAAAAGTTCAGAATGGAGGATTTATTGATTTGAATATACCAGGATTTGAGTTGAATGAACTCACAACAGCAACAACAACGACTGAATTGAATGAACTCAGTCCAAGAAATTTGTGCTTTGTGAGTGAGGTAAACAAAATGCCCATATTATCGGACGGAGGCAAGAGATGTGCCAATGATGATGATGATGTTTTGGTATTGGACCCATCTGATGTAAATGAAGAGATCTTTAATCGTAAAAGGAAGAGGGAGTCTATGCAGGGAATGCTAAGCTGGTTGACTGGCATTGCAAAGAATCCCTGTGATTCCGTTGTTGATTCGATGCCTGAAAAATCAAAGTGGAGGTCTCACAGCAATGAGAAGGTCTGGAAGCAGGTTTTGTTGTTTCGGGAGGCTGCTTTTCTGAAGCGACACGCAGAGTCAAGCAGTGAACAACTGAATTGGCAGAGACAAAAGATGCATCCATCCATGTATGAAGATCTCCTTGAGGCGACATACAATCTTAGGGAGAGGTGTAAGCGTACCAAGAAGCTTTTATTTGAAAAATCTAGGTCTGCAAGAGTCTCTTCAGATTCATCTATGGAAACCAAGGGTAATCTGGAGAGAACCTCTAGTCCTCACAATGAAGATTCTGCTGAGAAAAAGCTGCCTGATTCCTCTGCTGCACCATCAGGTCTTGACAATTATGGCATAGTTCCCATACCTCTGGGGCCAAGTCATCAAGCTAAAGTACAAGAATGGACTGGCATGACTTTCGAAAGTGATTCAAAGTGGTTGGGGACCCGGATATGGCCGTCAGAGAAAGTGAATCACAGACTCTTGATTGAGAGGGACCCCATTGGCAAGGGAAGACAGGATTCATGTGGCTGCCAAGTACCCGGTTCTGTTGAATGTGTCAGATTTCATGTTGCTGAGAAAAGGGCTAAGGTGAAGCTGGAATTAGGTGTGGCTTTTTACCTGTGGAATTTAGATAAGGTAGGTGAAGATGTTAGACAATCGTGGACAGTGGATGAAGAGAAGAAGTTTAAGGATGTGGTGCGATCAAATCCTCCATCACTAGAGAGATACTATTGGGATCATATTTTTAAGTCATTTCCGAAGAAGACCAGGGAAGATTTAGTTAGCTACTATTTCAATGTCTTCCTTTTGCAGCGTCGAGCATATCAGAACAGGAATACTCCAAATGAAATTGATAGTGATGATGAAGAATCAGAATTTGGACCTTTGAGGAATGCTTTTGGACAGCAAGCACAGAAGCCAACCAGTTCCATCTTGCTAACCCCCAAAAAGTCTCAGACAAAGAACAAATAG 2013 0.4272 MKKNLGGEIWEVERKPRAKVKKGHKRVIEESPTQNFSTLWIEDESVSEGRNVQVEGELDSSGVEALAGKLRFCCDQVSYWFLKENCPRRTSSMLGNGKSVDLYKLFKVVKENGGYDAVSKNRLWDLVGEQSGLGTSIGSFVQLIYNKYLITLEIWLKQAADNKISNCSLEFNRVDFGRHLMELHAEFEGSLSDCNDEELGDEMCQRSEFKTEYKSQDGEVLFDAKGVKSRSGGAKKVQNGGFIDLNIPGFELNELTTATTTTELNELSPRNLCFVSEVNKMPILSDGGKRCANDDDDVLVLDPSDVNEEIFNRKRKRESMQGMLSWLTGIAKNPCDSVVDSMPEKSKWRSHSNEKVWKQVLLFREAAFLKRHAESSSEQLNWQRQKMHPSMYEDLLEATYNLRERCKRTKKLLFEKSRSARVSSDSSMETKGNLERTSSPHNEDSAEKKLPDSSAAPSGLDNYGIVPIPLGPSHQAKVQEWTGMTFESDSKWLGTRIWPSEKVNHRLLIERDPIGKGRQDSCGCQVPGSVECVRFHVAEKRAKVKLELGVAFYLWNLDKVGEDVRQSWTVDEEKKFKDVVRSNPPSLERYYWDHIFKSFPKKTREDLVSYYFNVFLLQRRAYQNRNTPNEIDSDDEESEFGPLRNAFGQQAQKPTSSILLTPKKSQTKNK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0109 670 CDD SANT 567 615 IPR001005 -
Lele44g0109 670 SUPERFAMILY ARID-like 96 163 IPR036431 GO:0003677
Lele44g0109 670 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 67 667 - -
Lele44g0109 670 Pfam ARID/BRIGHT DNA binding domain 92 152 IPR001606 GO:0003677
Lele44g0109 670 MobiDBLite consensus disorder prediction 418 456 - -
Lele44g0109 670 CDD ARID 81 153 - -
Lele44g0109 670 SMART ARID_2 64 153 - -
Lele44g0109 670 Pfam Myb-like DNA-binding domain 565 614 IPR001005 -
Lele44g0109 670 ProSiteProfiles ARID domain profile. 67 157 IPR001606 GO:0003677
Lele44g0109 670 SMART bright_3 74 158 IPR001606 GO:0003677
Lele44g0109 670 MobiDBLite consensus disorder prediction 626 670 - -
Lele44g0109 670 MobiDBLite consensus disorder prediction 436 450 - -
Lele44g0109 670 MobiDBLite consensus disorder prediction 419 435 - -
Lele44g0109 670 MobiDBLite consensus disorder prediction 648 670 - -
Lele44g0109 670 SMART sant 564 617 IPR001005 -
Lele44g0109 670 SMART ELM2_2 468 519 IPR000949 -
Lele44g0109 670 Gene3D - 66 168 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0109 Lele-ChrLele44 648518 653822 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele44g0109 ARID 8.4e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1289 41 21611669 21614250 Lele44g0109 44 648518 653822 hybridization
Lele42g1249 42 24554798 24557414 Lele44g0109 44 648518 653822 hybridization