Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0107 ATGCAATCTACTGGTCCTGGTGGACCCGGCCGGATCCCAGGAGTGGGGCCGGCAGGGCGCGCCGCATCTTCATCTGCCTCCCAATCCTCTTCATCTTCGGCAGTGTCGACGACGCACTTGGGGTTAGACACGTTGCAGCAGCAGCAACACCCGCAGATTGGTTCTAGGCAGTCATTGCAACAGCAACTGCTTAGAAAACCTGAAGGGAATGAAACATTTTCAGCATATCAAGCCGGGCTTCAAGGGGTGTATGGTACTAACAATTTCTCATCTCCCAGTCCTGTACAACTGCCCCAGCAGTCACGGAAATCAATTGATTTTTCTCAGCATGGTTCTAGTCAGGAGGCCCAGATCAGGGGCCAAGGCATGGAGCAACAAACGCCTAATCCTGTCCATCAAGCATACCTTCAATATGCTCTGCAAGCTGCCCAACAAAAGTCTGCTTTGGCAATGCAATCTCATCAGCAAACTAAAATGGGAATGTTAGGCCCTTCAACCGAAAAGGATCAAGAAATGCGTATGGGAAACTTGAAAATGCAGGAATTAATTCCCTTGCACACAGTTAATCAAACACAATGTTCAACTCCTAGGAATTCATCTGAACAATTCTCTCGTGGGGAAAAGCAGATGGATCAAGGACAGCACCAAGCAATGGATCACAAGAGTGAGGGAAAGTCTTCAACCCAGGGACTGGCCATTGGGCACATAATGCCTGGAAATATGATAAGACCCATGCAAGCACCACCAACTCCTCAAGGCATCCAAAATGTTGTGAACAACCAGATGGCAGTATCTGCTCAACTGCATGCTATGGAGGCATGGGCTCATGAACGTAACATTGATCTATCGCATCCTGCAAATGCTAACTTAGTGGCACGACTCATTCCTATGATGCAGTCAAAGATGGTTTCACAACAAAAGCCAAATGAGAATAACGTTGCTCCTCAGTCATCAGCCATCCCTGTTTCAAAACAGCAAGTTACTTCTCCAATGGAGAACCAAGCACATGCTAATTCATCAAGCGACTTGTCTGGGCAGTCTGGATGTGCAAAAACCAGGCAGACAGTTCCCCCCAGCCACTTCATTCCACCAACAAATGCTGGTACAGCCAGTAGTGGCAGTGACGTGGCAGTGCAACAAATTAACATTCATGGCAGAGAGTCTCAAGCATCTCTGAGGCAACCTGTTGCTGTTGGAAATGGATTGCCTCCTATGCGTCCCCAACAGGTTTCTGTTAACATGAGTCATGTTACAGATCATCCTTTGAATGCTAAAAATCTGCTACCAGGACCAGATTCACCACAAGTTCAACACATGAGGCAGTTAAACCCCTCTTCTGCTCTGACTACTGGTTCCACAATTGAAGGGGCTTCAGGAAATAATGTCAAACTCCTTGGGGCACCAACTCAGATACCTCAGCAACGTCCTGGATTTACTAAACAGCAGTTGCATGTACTTAAAGCACAGATATTAGCATTCAGGAGGCTGAAGAAAGGAGAAGGTGCACTTCCGCAAGAACTTCTCCAGGCTATTGCTCCACCACCTCTTGAGTTGCAACTGCAGCAGACAAGCCATCCTGTTGGAGGACAGAGTATAGAGAAATCTGCTGGCAATACCGTGGCAGAACACTCAAAGCACATTGAGTCCAAAACAAAGGATATTCAATCTGTCCCTGCAATAAATGAACAGAGTTCCTCAAAGCAGGAAGCCTCTTCCAGGGATGAGAAATCCACTGCTCCAACAGTTAATATGCAACCTGTGCCGGGTGTGCCGAAGGAAGTTTCTCCTGTTGGAAAAGAAGAGCAGCAATCAATGAAGTCAGACCAGGAGTATGACCGTGGCATTAACAGAACTCCTGTTAGAACTGAGTTGCCTTTAGATAGGGGAAAAGCTATCGTACCACATGACACAGTTCAACCTATGAAACCTGCACAAACTAGCTCTGTTACCCAATCGAAGGATGTGGCAACCCCAAGAAAATATCATGGACCTCTTTTTGATTTCCCTTTTTTCACTAGGAAACCTGACTCATTTGGGTCATCTATGGTGGTGAACAACAATAATTTGTCTCTGGCATATGATGTCAAAGATCTTCTTTATGAGGAAGGCATGGAATTACTTACAAAGAGAAGGGTAGAAAATTTAAAAAAGATTGAAGGTTTATTGGCAGTGAACTTGGAGAGAAAAAGAATTAGGCCAGATCTTGTTTTGAGGCTGCAAATTGAAGAGAAAAAGCTTCGTCTTTTAGATCTTCAGGCACGACTGAGGGATGAGATTGATCAGCAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGACTGTGTGAGCGTCAGCGTATTGAACTTGCTAGACAAGTGCAAGCCTCTCAGAGAGCTTTACGGGAGAAACAACTCAAATCTATATTTCAGTGGCGAAAGAAGCTTCTTGAGGCACATTGGGCTGTTCGTGATGCTCGAATTGCTCGCAACAGGGGTGTGGGCAAATATCATGAAAGAATGTTGAGGGAATTCTCGAAGCGTAAAGATGATGATAGGAACAAAAGGATGGAAGCCTTGAAAAATAATGATGTTGACAGATACAGGGAGATGTTGCTAGAGCAGCAGACTAGCATCCCCGGTGATGCTGCAGAGAGATATGCTGTGCTTTCAACCTTCTTAACACAGACTGAGGATTATCTACAAAAATTGGGAAGTAAAATAACAACTGCCAAAAATCAGCAGGAAGTGGAGGAGGCGGCAAGAGCCGCTGCAGCTGCAGCACGATTGCAGGGTCTCTCTGAAGAAGAAGTCAGAGCAGCTGCAGCTTGTGCTGGGGAGGAAGTGATGATTAGAAATCGTTTTACGGAGATGAATGCTCCTAAAGACAGTTCATCTGTCAGCAAGTATTACAGTCTTGCTCATGCTGTGAATGAAAAGGTCATAAGGCAGCCATCTATGTTACGAGCTGGAACCTTAAGAGACTATCAGCTTGTTGGCTTGCAGTGGATGCTTTCATTGTATAACAACAAGTTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGTAAAACTGTGCAGGTTATGGCCTTGATTGCCTACTTGATGGAATTTAAAGGAAATTATGGCCCGCATCTTATAATTGTTCCAAATGCAGTTCTGGTTAACTGGAAGAGTGAGTTGTATAATTGGTTACCCTCTGTGTCATGCATTTTTTATGTTGGAGGGAAGGACCAACGGTCAAAACTATTTTCTCAAGAGGTTTCTGCCTTGAAATTTAATGTCCTTGTGACAACTTATGAATTCATCATGTATGACCGGTCCAAATTGTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCGCAAAGAATGAAGGATAGGGATTCTGTTCTAGCTCGTGATCTTGATAGATACCGTTGTCAGAGACGTCTTCTTCTGACTGGAACACCATTGCAGAATGATCTGAAGGAGCTCTGGTCACTCTTAAATTTACTTCTTCCAGAGGTTTTTGATAATCGAAAAGCATTTCATGATTGGTTTTCAAAACCTTTTCAAAAGGAAGATCCTACTCAAATTGTAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATCATTATTCATAGACTCCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTACCACCAAAGGTGTCCATAGTTTTACGATGTAAAATGTCAGCTATTCAGAGTGCCATTTATGACTGGATCAAATTCACTGGTACCCTTCGGCTTGATCCTGAGGATGAGAAGCGTAGAGTTCAAAAGAATCCACTTTACCAGGCGAAGCAGTATAAAACTTTGAATAATAGGTGCATGGAGTTGCGTAAGACCTGCAATCATCCGTTGCTTAATTACCCATACTTCCATGACTTATCCAAAGAGTTCCTTCTGAGATCTTGTGGGAAATTGTGGATCCTTGATAGGATCCTTATTAAACTGCAGCGAACTGGACATCGAGTTCTGCTGTTTAGTACTATGACCAAACTTCTAGACATTATAGAAGAATACCTGCAATGGCAACGACTTGTTTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAAGCAGCTATAGTGGACTTTAATAGCCCAGATTCAGACTCTTTCATCTTCTTGCTTAGTATTAGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCAGCAGACACAGTCATCATATATGATCCTGATCCAAACCCAAAAAATGAGGAGCAGGCAGTTGCAAGAGCTCATCGCATTGGACAGACTAGAGAAGTCAGGGTTATCTACATGGAAGCTGTTGTTGACCAAATTCCTAGCCATCAAAAAGAGGATGAGCATAGAAGTGGGGGCACTGTCAATTTGGAGGATGAACTTGCAGGTAAGGATCGTTATATGGGATCCATTGAGAGCCTTATTAGGAACAATATTCAACAATACAAGATTGATATGGCCGATGAGGTTATCAATGCTGGACGTTTTGATCAAAGAACAACACATGAAGAGAGACGTATGACTTTGGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTGTCCACGATGTTCCCTCACTACAGGAGGTGAATCGCATGATTGCCAGGAGTGAAGAAGAACTTGAGCTGTTTGATCAAATGGATGAAGAACTGGATTGGACTGAGGAGATGACTTGTTATGATCAGGTGCCTAAATGGCTTAGAGCCAGTACAAGAGAAGTCAATGCCACTATTGCTGTATTATCAAAAAGACCTTCAAAGAACACTTTCTTGGGTGGTGGTATCGCTGTGGAATCCGGTGAAATGGGTTCTGATGCGTCTGCAAAAACTGAAAGGAGAAGAGGACGACCCAAGGGGGGAAAACATCCTAGTTATAAAGAGTTAGAAGATGAAAATGGAGAATCCTCTGAAGCAAGTTCTGAAGAAAGAAATGGATATTCTGCAAATGAAGAAGGGGAAATAGGAGAATTTGAAGATGATGGTTATAGTGGTGCTGATGGAGCTCAACCAAATAATAAAGATCAAATGGATGATGGTCCACCTTGTGATGCAGGATATGAATTTCCTCGTTCCACAGAAAGCATGAGAAGCAGTCATATGGTTGAAGAAGCTGCTTCCTCAGGATCGTCTTCAGACGGTCAAAGATTAACACAGACTATTTTTCCTTCAGTTTCCTCTCAGAAATTTGGTTCCCTCTCTGCATTAGATTCTAGGCCAAGTTCCATTTCCAAAAGGATGACGGATGACTTAGAGGAAGGGGAAATTGCGGGATCTGCTGATTCTCACATGGATCACCAGCAATCTGGCAGTTGGATTCATGATCGTGATGAAGGAGAAGATGAACAAGTTTTGCAGCCTAAATTTAAACGAAAGCGCAGTCGCCGAGTCCGACCCCGTCATGCTACAGATAGGTTTGAGGAAAAGTCTAGCAGTGAGATGGCATCTCTTCAACGTGGAGAATCCGCTCATTTGACTGTCCAAGCAGAACATAAATATCATGCGCAATCACGGGCTGACCCAGATGTAAAATCACGTGGAGAATTTAAGGCTGCCAGGCATGATCAGAATGAGTTAAAAAATAAGCGAAGTTTGACTTCAAAGAGAGTAACTAATAAATTGCATGGTTCACCTAAATCCGGTAGATTGAATTGTATTTCTGCCCCTTCAGAGGATGGTGGTGAACAACTCAGAGAAAAGTGGGAGGGTAAGCCTATCAATTCAAGTGGGTCTTCAGCAATTGGTGCTAGAATGTCTGAAATAGTCCAGAGAAAGTGCAAGAATGTAATTAGCAAGTTTCAAAGGAGAATAGATAAGGAAGGTCCTCAAATTGTACCTTTGCTTACTGACTTGTGGAAGAAGAATTCTGGACATGCTCGTGTATGTGGGAATAATTGGTTGGACATACAGAAGATTGATCAGCGAATTGATAGGTTTGAATATAATGGAGTATTGGAGCTTGTGTGTGATGTGCAGTTCATGTTGAAGTGTGCAATGGATTTTTACGGATTCTCACATGAGGTAAGATCTGAAGCAAGGAAGGTCCATGATCTCTTCTTCGATATCTTAAAAGTTGCATTTCCTGATACGGACTTCCAAGGGCCAAGAAGTGCACTTTCTTTTGCTGCACCGACTTCTGTCAGTACTCTAACATCCCCAAGGCAATTGGCTGTTAGCCAAAGCAGAAGACACAAGCTGATAAATCAGGTGGAAAATGATCCAAGCCCTTCACAGAAGCATCTGCATCGGGGTTTTATTCCGAGTGGTGAAAGCACCAGGATCAGAGTGCAACTGCCACCGAAGGATTCAAGAACTGGAACTGCTTCTGGCAGTGCCAGAGAGCAAATTCAGCAGGATGATTCACCACTACTCACACATCCAGGTGAATTGGTAGTATGTAAGAAGAGAAGAAATGAGAGGGACAAATCCTCAGGGAAGACTCGGGGTGGCTCCACCGGTCCTGTTTCACCGCCTAGCTCTGGTCCTGCTATAAGAAGTCCAGGACCAAGTTCAGGTTCAAAGGAAGCTAGACTAGCTCAACAGCCTGCTCAAGGGTGGATGCGCCAGCCATCTCAACAAGCAAATGGGTCTGGTGGATCGGCTGGTTGGGCAAATCCTGTGAAGCGGTTGAGGACAGATTCTGGGAAAAGGAGACCAAGCCATCTATAG 6699 0.4381 MQSTGPGGPGRIPGVGPAGRAASSSASQSSSSSAVSTTHLGLDTLQQQQHPQIGSRQSLQQQLLRKPEGNETFSAYQAGLQGVYGTNNFSSPSPVQLPQQSRKSIDFSQHGSSQEAQIRGQGMEQQTPNPVHQAYLQYALQAAQQKSALAMQSHQQTKMGMLGPSTEKDQEMRMGNLKMQELIPLHTVNQTQCSTPRNSSEQFSRGEKQMDQGQHQAMDHKSEGKSSTQGLAIGHIMPGNMIRPMQAPPTPQGIQNVVNNQMAVSAQLHAMEAWAHERNIDLSHPANANLVARLIPMMQSKMVSQQKPNENNVAPQSSAIPVSKQQVTSPMENQAHANSSSDLSGQSGCAKTRQTVPPSHFIPPTNAGTASSGSDVAVQQINIHGRESQASLRQPVAVGNGLPPMRPQQVSVNMSHVTDHPLNAKNLLPGPDSPQVQHMRQLNPSSALTTGSTIEGASGNNVKLLGAPTQIPQQRPGFTKQQLHVLKAQILAFRRLKKGEGALPQELLQAIAPPPLELQLQQTSHPVGGQSIEKSAGNTVAEHSKHIESKTKDIQSVPAINEQSSSKQEASSRDEKSTAPTVNMQPVPGVPKEVSPVGKEEQQSMKSDQEYDRGINRTPVRTELPLDRGKAIVPHDTVQPMKPAQTSSVTQSKDVATPRKYHGPLFDFPFFTRKPDSFGSSMVVNNNNLSLAYDVKDLLYEEGMELLTKRRVENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRIELARQVQASQRALREKQLKSIFQWRKKLLEAHWAVRDARIARNRGVGKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEDYLQKLGSKITTAKNQQEVEEAARAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFTEMNAPKDSSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELYNWLPSVSCIFYVGGKDQRSKLFSQEVSALKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEDPTQIVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAIQSAIYDWIKFTGTLRLDPEDEKRRVQKNPLYQAKQYKTLNNRCMELRKTCNHPLLNYPYFHDLSKEFLLRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIIEEYLQWQRLVYRRIDGTTSLEDREAAIVDFNSPDSDSFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVRVIYMEAVVDQIPSHQKEDEHRSGGTVNLEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEELELFDQMDEELDWTEEMTCYDQVPKWLRASTREVNATIAVLSKRPSKNTFLGGGIAVESGEMGSDASAKTERRRGRPKGGKHPSYKELEDENGESSEASSEERNGYSANEEGEIGEFEDDGYSGADGAQPNNKDQMDDGPPCDAGYEFPRSTESMRSSHMVEEAASSGSSSDGQRLTQTIFPSVSSQKFGSLSALDSRPSSISKRMTDDLEEGEIAGSADSHMDHQQSGSWIHDRDEGEDEQVLQPKFKRKRSRRVRPRHATDRFEEKSSSEMASLQRGESAHLTVQAEHKYHAQSRADPDVKSRGEFKAARHDQNELKNKRSLTSKRVTNKLHGSPKSGRLNCISAPSEDGGEQLREKWEGKPINSSGSSAIGARMSEIVQRKCKNVISKFQRRIDKEGPQIVPLLTDLWKKNSGHARVCGNNWLDIQKIDQRIDRFEYNGVLELVCDVQFMLKCAMDFYGFSHEVRSEARKVHDLFFDILKVAFPDTDFQGPRSALSFAAPTSVSTLTSPRQLAVSQSRRHKLINQVENDPSPSQKHLHRGFIPSGESTRIRVQLPPKDSRTGTASGSAREQIQQDDSPLLTHPGELVVCKKRRNERDKSSGKTRGGSTGPVSPPSSGPAIRSPGPSSGSKEARLAQQPAQGWMRQPSQQANGSGGSAGWANPVKRLRTDSGKRRPSHL 2232
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0107 2232 FunFam Brahma1 1927 2048 - -
Lele44g0107 2232 SMART QLQ_2 476 513 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele44g0107 2232 MobiDBLite consensus disorder prediction 302 375 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 522 538 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 1 65 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 87 120 - -
Lele44g0107 2232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1221 IPR027417 -
Lele44g0107 2232 Coils Coil 1538 1558 - -
Lele44g0107 2232 Gene3D - 1927 2055 IPR036427 GO:0005515
Lele44g0107 2232 Gene3D - 982 1230 IPR038718 -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 2140 2156 - -
Lele44g0107 2232 SMART helicmild6 1348 1432 IPR001650 -
Lele44g0107 2232 Pfam QLQ 478 511 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele44g0107 2232 ProSiteProfiles QLQ domain profile. 477 513 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele44g0107 2232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1225 1562 IPR027417 -
Lele44g0107 2232 CDD Bromodomain 1978 2033 - -
Lele44g0107 2232 SUPERFAMILY Bromodomain 1978 2039 IPR036427 GO:0005515
Lele44g0107 2232 FunFam ATP-dependent helicase BRM 982 1230 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 1835 1875 - -
Lele44g0107 2232 Gene3D - 793 866 - -
Lele44g0107 2232 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1003 1168 IPR014001 -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 21 65 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 1810 1824 - -
Lele44g0107 2232 Coils Coil 741 765 - -
Lele44g0107 2232 PANTHER SNF2/RAD54 HELICASE FAMILY 737 1648 - -
Lele44g0107 2232 FunFam ATP-dependent helicase BRM 1231 1441 - -
Lele44g0107 2232 CDD SF2_C_SNF 1317 1442 - -
Lele44g0107 2232 Gene3D - 1231 1440 IPR027417 -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 1702 1752 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 1598 1919 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 2183 2210 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 1753 1770 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 2112 2132 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 2079 2232 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 1778 1798 - -
Lele44g0107 2232 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1322 1499 IPR001650 -
Lele44g0107 2232 SMART ultradead3 987 1176 IPR014001 -
Lele44g0107 2232 Pfam SNF2-related domain 994 1298 IPR000330 GO:0005524|GO:0140658
Lele44g0107 2232 MobiDBLite consensus disorder prediction 190 226 - -
Lele44g0107 2232 SMART bromo_6 1929 2038 IPR001487 GO:0005515
Lele44g0107 2232 MobiDBLite consensus disorder prediction 522 611 - -
Lele44g0107 2232 MobiDBLite consensus disorder prediction 190 211 - -
Lele44g0107 2232 Pfam Helicase conserved C-terminal domain 1321 1432 IPR001650 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele44g0107 Lele-ChrLele44 628868 639867 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0107 1012 1457 RAD5 or RAD16-like Gene Family AT1G02670 26.112 2.16e-28 122
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele44g0107 SNF2_N 8.9e-65 CL0023