Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0072 ATGAACGATAGAGCTAGATATCCACCTGGGATTGGCGTAGGTCGAGGAGGAGGTATGAACTCGAACCCTGCGTTTCAACCGCGACCTCATCAGCAACAGTATGTGCAAAGGCATTTAGTGCAGAATCAACAGCAGTATCAACATCAGTATCAGCATCCTCAACAGCAACATCAGCAGTTACAACAGCAGCAGCAACAACAATGGCTTAGAAGAACGCAATTGAGTGGTGCTGATTCTAACGTAGTTGACGAGGTCGAGAAGACTGTGCAGTCTGAAGCCGTTGATTCAAGTTCTCAAGATTGGAAAGCAAGATTAAAGATACCACCGCCTGATACTCGCTATAGGACTGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAAGCCTTCTCCTATTCAGGAAGAAAGTATCCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGAGCAAAAAATGGAACGGGAAAAACAGCTGCATTTTGCGTTCCTGCACTAGAAAAAATTGATCAGGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACACGTGAATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTGGGAAAGCATCTGAAAATTCAAGTCATGGTTACAACGGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCTGTTCATTTACTTGTTGGAACTCCAGGAAGAATCTTAGATCTTGCAAAGAAGGGTGTCTGCATTTTGAAAGACTGTAGTATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCACCAGAATTCCAACCTTCGATAGGGCAATTGGTTCATTTCCTGCCTCCAAACCGTCAAATCCTGATGTTTTCAGCTACTTTTCCTGTTACCGTAAAGGACTTCAAAGATAGATTTCTTCGAAAACCGTATATCATTAACCTTATGGATGAGTTAACTCTGAAAGGTATTACACAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTCCACTGTCTCAATACACTTTTCTCTAAGCTGCAAATAAACCAGTCAATTATCTTCTGCAATTCGGTGAATCGGGTTGAGCTCCTTGCCAAGAAAATCACAGAACTTGGCTATTCATGCTTCTATATCCATGCAAAGATGTTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGCAATGGTGCTTGTAGAAATCTTGTTTGTACTGATCTTTTTACCAGGGGAATAGACATTCAAGCAGTTAATGTGGTCATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCACCTTGGTCTAGCAGTTAACCTAATCACCTATGAGGATCGTTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCACCGCATATTGATCAGGCAATTTATTGCCGGTGA 1500 0.4073 MNDRARYPPGIGVGRGGGMNSNPAFQPRPHQQQYVQRHLVQNQQQYQHQYQHPQQQHQQLQQQQQQQWLRRTQLSGADSNVVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIGQLVHFLPPNRQILMFSATFPVTVKDFKDRFLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 499
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0072 499 FunFam ATP-dependent RNA helicase DDX6 106 329 - -
Lele44g0072 499 Gene3D - 330 499 IPR027417 -
Lele44g0072 499 MobiDBLite consensus disorder prediction 1 62 - -
Lele44g0072 499 Pfam Helicase conserved C-terminal domain 351 457 IPR001650 -
Lele44g0072 499 FunFam ATP-dependent RNA helicase DDX6 330 499 - -
Lele44g0072 499 CDD SF2_C_DEAD 337 466 - -
Lele44g0072 499 CDD DEADc_DDX6 127 327 - -
Lele44g0072 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 496 IPR001650 -
Lele44g0072 499 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 61 498 - -
Lele44g0072 499 Gene3D - 83 329 IPR027417 -
Lele44g0072 499 MobiDBLite consensus disorder prediction 24 62 - -
Lele44g0072 499 SMART ultradead3 144 340 IPR014001 -
Lele44g0072 499 Pfam DEAD/DEAH box helicase 150 314 IPR011545 GO:0003676|GO:0005524
Lele44g0072 499 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Lele44g0072 499 SMART helicmild6 376 457 IPR001650 -
Lele44g0072 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 326 IPR014001 -
Lele44g0072 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 479 IPR027417 -
Lele44g0072 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele44g0072 Lele-ChrLele44 416902 421361 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0072 125 496 Eukaryotic Initiation Factors Gene Family AT3G19760 39.037 1.32e-96 296