Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0068 ATGGCATTCACAGGAACATTGGATAAATGCAATGCATGTGATAAGACTGTTTATGTGGTGGATCTGTTGTCGCTTGAGGGAGTTCCTTACCATAAATCTTGCTTTAGATGCAGTCACTGCAAGGGGTCCCTTTCGATGAGTAGCTACTCTTCAATGGATGGTGTTCTGTATTGCAAGCCTCATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAGACAGCAAAGTCTTCTGAAAAATCACATGACACGAGCAAGAACTCAAACAAACTCTCTTCATTGTTCAGTGGAACACAAGACAAATGTGCAGTTTGCACTAAAACAGTCTATCCTCTGGAGAAGGTGACACTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGCGCTCATGCAGGGTGTCCTCTGACAAACTCTTCCTATGCTGCTCTTGATGGTGTCCTGTATTGCAGGCACCACTTTGCTCAGCTTTTCATGGAGAAAGGTTCTTACAACCATGTCAAGCAAGTCACTGCTCACAAAAAGAACTCTGCTTCTGGTCAGCGTGATGACCATCCTAAAGATGGCTCTCACCCAGATGATGAACATCCATCTCAGGACCATGATGGCACTAAACATGAAGTAGATGAAGATGAACAATCTTGA 657 0.4338 MAFTGTLDKCNACDKTVYVVDLLSLEGVPYHKSCFRCSHCKGSLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSEKSHDTSKNSNKLSSLFSGTQDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTNSSYAALDGVLYCRHHFAQLFMEKGSYNHVKQVTAHKKNSASGQRDDHPKDGSHPDDEHPSQDHDGTKHEVDEDEQS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0068 218 Pfam LIM domain 10 65 IPR001781 -
Lele44g0068 218 Pfam LIM domain 106 161 IPR001781 -
Lele44g0068 218 MobiDBLite consensus disorder prediction 174 218 - -
Lele44g0068 218 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Lele44g0068 218 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lele44g0068 218 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lele44g0068 218 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Lele44g0068 218 PANTHER OS06G0237300 PROTEIN 6 102 IPR045268 -
Lele44g0068 218 MobiDBLite consensus disorder prediction 181 218 - -
Lele44g0068 218 FunFam LIM domain and actin-binding 1 4 74 - -
Lele44g0068 218 Gene3D Cysteine Rich Protein 5 72 - -
Lele44g0068 218 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Lele44g0068 218 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Lele44g0068 218 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lele44g0068 218 Gene3D Cysteine Rich Protein 100 170 - -
Lele44g0068 218 FunFam LIM domain and actin-binding 1 100 170 - -
Lele44g0068 218 SMART lim_4 105 157 IPR001781 -
Lele44g0068 218 SMART lim_4 9 61 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0068 Lele-ChrLele44 397047 398613 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele44g0068 LIM 9e-11 CL0167