Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0055 ATGATGAAGAAACAGGTTTTGATGCTGTGGTGGTTTGGAATCATGACTATACAACTCTGCTTCTCGCTGGCTGCTTCTTCTGATGGCAACATATCAGACAGTGCTGCGGTTAAGCTAAATGCACCAGATCCAAACCAACTGGTCATTGACAATGGCATCGTTCAACTCACTCTATCTTCACCTCAAGGCTATGTTATTGGAATCTCATACCATGGAATTGACAATCTCCTAGAATCTCGTCACGCGCTAAACGACAGAGGGTATTTTGACGTAGTTTGGAATGAACCAGGAAAGAATAGTATTGCTCAAAGAATCATTGGGACCCATTTCTCAATCGTAGCATCGGACGAGAGCCAAGTGGAGGTTTCGTTTGTGAGAACATGGACTTCCTCAATGCAAGGCACTGATGTGCCCATTAACATTGACCAAAGATATGTATTGCGACGAGGTAGCTCTGGATTTTACTCTTATGTGATATTCGAGCGTCCACAAGGATTTCCAGCCGTCGAGGTTGATCAACTTAGGACTGTCTACAAACTCCAAGAACAAAGGTTTCATTATATGGCTGTATCAGACAACAGGCAAAGATTCATGCCAACCATGGAAGATAGAGAGATTGGGAAAGTCCTGGATTATCCTGAAGCTGTTCTCTTAACCCAGCCTTCCGACAAAGATTTCAAAGGAGAGGTGGACGACAAATATGAGTACTCTTGTGAGAACTCAGACAACAGAGTACATGGTTGGATTAGCTTTGATTCTAGTGCAGCCGTAGGCTTCTGGATGATAACACCTAGCAACGAGTTTCGCAATGCTGGACCCACTAAGCAAGACCTCACATCTCATGTGGGCCCCTTTACCCTTTCGATGTTTGTGAGCACCCACTATGCTGGGAAGGAGGTCACCATGGCATTTCAAGAAGGGGAGACCTATAAGAAGGTTTTTGGCCCTGTTTTTGTGTATATCAACTCTCTTTCAAGCAATGAGGATCCACACACGCTTTGGCCAGATGCAGTGCAACAGATGTACAAGGAAGCCCAAAGCTGGCCTTATGATCTCCCACATTCAAAAGACTTCATTCCATCTAATCAACGTGGAAGTGTAGTCGGAAGATTACTCGTACAAGATCGGTATATCCGAGGAGGGAGACTTCTATATGCTGAATCTGCTTATGTTGGTCTAGCTCTTCCCGGTGCTGAAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACACAAGCTGATAACAAGGGCTATTTCATGATTAAGAATGTTATACCAGGGCACTATAATTTGTTTGCGTGGGTTCCTGGCTTTATTGGTGATTACAAATATAATAATATAATCACTATCACGCCAGGCTGTTTAATCCAATTGGATTCACTTGTATTTAGTCCTCCAAGAAATGGTTCTACTCTTTGGGAAATTGGAGTTCCAGATCGCACAGCCGCAGAATTCTATATCCCAGACCCTAACCCTAAACTCATCAACAAATTATACAATAAACAACTCAAAGACAAGTTTAGGCAATATGGACTGTGGGAACGTTATGCTGACTTGTATCCACATAATGATCTAGTTTACACTGTTGGTGTTGATAGCTATGATCGAGACTGGTTTTACGCTCATGTTACAAGGAGAATCGGAAATGGAGTGTATCAACCAACGACATGGCAAATTATATTTGAACTTGAAGACAATGCATTCACTGGAAGTTATACACTACGATTAGCCCTGGCATCAGCCACTCATTCTCAATTGCAAGTTTGGGTGAATGAGGAAGGTGATAATGGTGCAATATTTGAAAGAGAAGATATGGGAGGAGATAATGCAATAGCAAGGCATGGAATCCATGGATTATATTGGTTGTTCAGTATCGATGTTCCAAGCGATCGTTTTGTGAAAGGGAAAAATATTATATATTTAAGACAATCCAATGCCACTAATGCTTTTCAGGGAGTTATGTATGACTATATTCGTTTAGAAAGTCCTTCCACTCTAAAGGCTTGA 2013 0.4208 MMKKQVLMLWWFGIMTIQLCFSLAASSDGNISDSAAVKLNAPDPNQLVIDNGIVQLTLSSPQGYVIGISYHGIDNLLESRHALNDRGYFDVVWNEPGKNSIAQRIIGTHFSIVASDESQVEVSFVRTWTSSMQGTDVPINIDQRYVLRRGSSGFYSYVIFERPQGFPAVEVDQLRTVYKLQEQRFHYMAVSDNRQRFMPTMEDREIGKVLDYPEAVLLTQPSDKDFKGEVDDKYEYSCENSDNRVHGWISFDSSAAVGFWMITPSNEFRNAGPTKQDLTSHVGPFTLSMFVSTHYAGKEVTMAFQEGETYKKVFGPVFVYINSLSSNEDPHTLWPDAVQQMYKEAQSWPYDLPHSKDFIPSNQRGSVVGRLLVQDRYIRGGRLLYAESAYVGLALPGAEGSWQRESKGYQFWTQADNKGYFMIKNVIPGHYNLFAWVPGFIGDYKYNNIITITPGCLIQLDSLVFSPPRNGSTLWEIGVPDRTAAEFYIPDPNPKLINKLYNKQLKDKFRQYGLWERYADLYPHNDLVYTVGVDSYDRDWFYAHVTRRIGNGVYQPTTWQIIFELEDNAFTGSYTLRLALASATHSQLQVWVNEEGDNGAIFEREDMGGDNAIARHGIHGLYWLFSIDVPSDRFVKGKNIIYLRQSNATNAFQGVMYDYIRLESPSTLKA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0055 670 CDD RGL4_N 45 323 - -
Lele44g0055 670 Gene3D - 40 337 IPR014718 GO:0030246
Lele44g0055 670 Pfam Rhamnogalacturonate lyase family 31 230 IPR010325 -
Lele44g0055 670 SUPERFAMILY Starch-binding domain-like 359 461 IPR013784 GO:0030246
Lele44g0055 670 CDD RGL4_C 475 663 - -
Lele44g0055 670 CDD RGL4_M 363 463 IPR029413 -
Lele44g0055 670 Pfam Polysaccharide lyase family 4, domain III 473 662 IPR029411 -
Lele44g0055 670 FunFam Rhamnogalacturonate lyase B 360 460 - -
Lele44g0055 670 Pfam Polysaccharide lyase family 4, domain II 388 459 IPR029413 -
Lele44g0055 670 SUPERFAMILY Galactose-binding domain-like 470 663 IPR008979 -
Lele44g0055 670 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 41 666 - -
Lele44g0055 670 Gene3D - 470 663 - -
Lele44g0055 670 Gene3D - 359 456 - -
Lele44g0055 670 SUPERFAMILY Galactose mutarotase-like 44 325 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0055 Lele-ChrLele44 324361 328979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0055 37 666 Polysaccharide Lyase AT1G09890 55.678 0.0 727