Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0034 ATGGGTAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTGACTTTCTCTAAAAGAAGGAGCGGTCTCATGAAGAAAGCTTATGAACTGTCAGTGCTTTGTGATGCTGAGGTTGCTCTTATCATTTTCTCTGGTCGTGGCAAGCTCTATGAATTCGGAAGTGCTGGCATTACTAAAACCTTGGAACGGTACCAGAAGTGCACTTTTACTTCTCAAGACACCAATGTTCTTGAGCTTGAAACCCAGAGCTGGTGCCAAGAGGTGTCAAACCTAAAGGCAAAGTATGAGTCTCTTCAGAGGACTCAAAGGCATTTGCTGGGGGAAGATCTGGGACCACTGAATGTGAAAGAGCTTCAGAATCTAGAGAAGCAGCTTGAAGGAGCTCTAGCTCAAGCCAGGCAAAGGAAGACAGAGATCATGATGGAACAAATGGAAGATCTACGCAGAAAGGAACGCCACCTGGGAGACATGAATCAGCAACTGAGACTGAAGGTGGAAGCAGAGGGATATAATGTGAAGAGCATAGAGAGCATATGGAGCAGACATTGTGAGTCATCAGCTGCCAATCCCAACTTTGCCTTGCCACCTTCCCATAACCCATTCCTGCATATTGGGTACCGTCATCATCAGTATGTGGAAGCTGCAGAGACATCTAATCATAATGCTTCCAATAGGGCCAATAACATGCTAGCTGAAACTAACTTGATGCAGGGCTGGCTCCTTTGA 741 0.4588 MGRGRVELKRIENKINRQVTFSKRRSGLMKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGITKTLERYQKCTFTSQDTNVLELETQSWCQEVSNLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALAQARQRKTEIMMEQMEDLRRKERHLGDMNQQLRLKVEAEGYNVKSIESIWSRHCESSAANPNFALPPSHNPFLHIGYRHHQYVEAAETSNHNASNRANNMLAETNLMQGWLL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0034 246 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele44g0034 246 Coils Coil 120 143 - -
Lele44g0034 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele44g0034 246 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele44g0034 246 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Lele44g0034 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele44g0034 246 FunFam MADS-box transcription factor 1 13 88 - -
Lele44g0034 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 200 - -
Lele44g0034 246 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lele44g0034 246 Coils Coil 217 237 - -
Lele44g0034 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele44g0034 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lele44g0034 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele44g0034 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele44g0034 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele44g0034 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0034 Lele-ChrLele44 207170 210551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0034 1 246 MADS-box Gene Family AT2G45650 60.311 1.01e-108 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele44g0034 K-box 6.5e-30 No_clan