Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0018 ATGGATACAGTTAGGCTCGCAAGGAGAAGTGAGGTCCCTTCTTACTGGGACGCTCGTCGCGACTACTGGGTTGCAGGGCCACACAGCAATAAGCCCCCCAAAACCCCTGCTTATCGTAACAAGGCTCCTAAGAATGAAGCAGATCCCAAACGCAATTCATCTCAAATCTGCAAATATTGGATCAATGGAAACTGCGTCCACGGCGATCGCTGTTGGTACTTGCATTCCTGGTTTCAGGCCCCTTCCCTTTCTCTACTCACTAAGCTCCATCAACACAAGAAGATTGTCACCGGGATCACCCTTCCGGTTGGATCGGACAGACTTTTTTCTAGTAGCACTGATGGGACACTTCGGGTGTGGGACTGCCACACGGGTCAATGCGTCCATGTAATAAATCTGGGCGAAGAAGCAAGGTCTTTGATCAGCGCGGGTTCTTGGGTTTTTGCCGGTTTGCGCAATTCTATCAAGGTCAAAGCCCTTGCACTTACGGCTGCTGAGATCACTCTTGATGGACCTAAGGGTCCTGTCCTTTCCATGGCTGTTTGCAACGATACACTTTTTGCTGGTGCCATGGATGGCGTTATTTATGCATGGAGATGCAGCTCAGAAGTGAATTCCCCTTTTAAACAGTTGGCAACGTTGAATGGCCACACCAGAGCCGTTTCTTCCTTAACTGGCGGACCTGGGCACAAGCTCTACTCAGGTTCCATGGATCATAGCGTCAAGGTTTGGGACCTCGACACATTACAATGCACAATGACGTTGAAAGGGCACACTGATGTGGTGACATCCCTTATTTTCTGGGACCAATACCTGTTCTCAAGTTCTTTGGACGGCACAGTAAAGGGTGTGGTTAAAATCAACGGCATGATTGATGCGGAAGGGAAATCCGTTTTGTTTTGCTCGTGCAACAACCATTCTGTTGGGCTCTATGAAATGCCATCGTTTGCTGCAAGAGGAAGATTGTTCTCAAAACAAGAGGTTCGAGTAATAGAAGAAGGCCCCGGCAGACAATTCTTCACTGGAGACGGCACCGGTTTGCTCACCGTCTGGCAATGGCTACCTCACTCCTCCGAGGCCAACCCCACATCTTCATAG 1098 0.4945 MDTVRLARRSEVPSYWDARRDYWVAGPHSNKPPKTPAYRNKAPKNEADPKRNSSQICKYWINGNCVHGDRCWYLHSWFQAPSLSLLTKLHQHKKIVTGITLPVGSDRLFSSSTDGTLRVWDCHTGQCVHVINLGEEARSLISAGSWVFAGLRNSIKVKALALTAAEITLDGPKGPVLSMAVCNDTLFAGAMDGVIYAWRCSSEVNSPFKQLATLNGHTRAVSSLTGGPGHKLYSGSMDHSVKVWDLDTLQCTMTLKGHTDVVTSLIFWDQYLFSSSLDGTVKGVVKINGMIDAEGKSVLFCSCNNHSVGLYEMPSFAARGRLFSKQEVRVIEEGPGRQFFTGDGTGLLTVWQWLPHSSEANPTSS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0018 365 MobiDBLite consensus disorder prediction 27 50 - -
Lele44g0018 365 Gene3D - 150 365 IPR015943 GO:0005515
Lele44g0018 365 PANTHER - 42 359 IPR044715 -
Lele44g0018 365 SMART c3hfinal6 51 77 IPR000571 GO:0046872
Lele44g0018 365 ProSitePatterns Trp-Asp (WD) repeats signature. 232 246 IPR019775 -
Lele44g0018 365 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 254 IPR001680 GO:0005515
Lele44g0018 365 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 248 - -
Lele44g0018 365 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 121 - -
Lele44g0018 365 Pfam Zinc finger domain 57 75 - -
Lele44g0018 365 Pfam Nucleoporin Nup120/160 97 134 - -
Lele44g0018 365 Gene3D - 28 76 - -
Lele44g0018 365 Pfam WD domain, G-beta repeat 209 245 IPR001680 GO:0005515
Lele44g0018 365 Pfam WD domain, G-beta repeat 250 282 IPR001680 GO:0005515
Lele44g0018 365 ProSiteProfiles Zinc finger C3H1-type profile. 51 78 IPR000571 GO:0046872
Lele44g0018 365 Gene3D - 77 149 IPR015943 GO:0005515
Lele44g0018 365 SUPERFAMILY WD40 repeat-like 73 354 IPR036322 GO:0005515
Lele44g0018 365 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
Lele44g0018 365 PRINTS G protein beta WD-40 repeat signature 186 200 IPR020472 -
Lele44g0018 365 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Lele44g0018 365 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Lele44g0018 365 SUPERFAMILY CCCH zinc finger 53 76 IPR036855 GO:0046872
Lele44g0018 365 SMART WD40_4 248 285 IPR001680 GO:0005515
Lele44g0018 365 SMART WD40_4 207 245 IPR001680 GO:0005515
Lele44g0018 365 SMART WD40_4 82 121 IPR001680 GO:0005515
Lele44g0018 365 SMART WD40_4 162 199 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0018 Lele-ChrLele44 107648 109414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0018 105 262 Eukaryotic Initiation Factors Gene Family AT2G46290 29.379 1.68e-09 57.0