Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele44g0013 ATGAAACATATTAGAAAAAAAAGTAAAAGTATCACTTCCCGCAAGAATTCTAGATGCGGTGCAATGCGGGACAAACCTACTGTGGATCGGAACAGATATTTGCATAGATATCCCTACAAGCCTTCTGCTTTATCGATTGGTACCTGTAGCCACGTGCTTATTATTGTCTGGTCAATACACTCAACCGTACTTCCATTTCCCCAAGGCTTATTCAGTTTCCTTCGTTCGGGTTTTCATTCTGCAATTTCTCCTCTCGCGCCTAGGGTTTCATTCGTCCAGGCTTCTAAGAGGTGTGGATCCTTCACTCTCTCTGCCATGAAGCGACAGATCTGCATGAGGCCTGTCTTTTGTGGAAACCTGGATTTTGATGCGCGCCAGTCTGATGTTGAGAGACTCTTCAGAAGATATGGGAAAGTTGATAGAGTGGACTTGAAGTCTGGGTTTGCTTTTGTTTACATGGAAGATGAACGTGATGCTGAGTATGCAATTAGAAGACTTGATAGAACAGAGTTTGGTAGAAAGGGGCGCCGAATACGTGTTGAGTGGACTAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGAAGATCTTCAACTAATATGAGACCATCAAAGACATTGTTTGTCATAAATTTTGATCCTGTTCACACTAGGACAAGGGATCTAGAGAGGCACTTTGATCCCTATGGTAAAATACTGAATATAAGGATAAGAAGGAATTTTGCTTTTGTTCAGTATGAATCCCTGGAGGATGCCACTAGAGCATTGGAGGCAACTAACATGAGCAAGTTATTGGATCGGGTTATAACAGTGGAGTATGCAATAAGAGATGATGATGATGATAGAAGAAATGGATACAGTCCTGATAGAAGAGGCCGAGACATATCCCCTGATGGGAGATATGGTCGTGGTAGATCACTTAGCCCTTACCGTAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCGAATCCAACTTCCAGACCGGAGCCAAGAGGAAGCCCCAAGTATGAACGGAATGAAAGCCCATTAAATGGAAGATATGACAGCCGATCACCGCGCCATGGGTCCCGTTCCCCAGGAGAAGTTGAATAG 1098 0.4417 MKHIRKKSKSITSRKNSRCGAMRDKPTVDRNRYLHRYPYKPSALSIGTCSHVLIIVWSIHSTVLPFPQGLFSFLRSGFHSAISPLAPRVSFVQASKRCGSFTLSAMKRQICMRPVFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRRSSTNMRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFVQYESLEDATRALEATNMSKLLDRVITVEYAIRDDDDDRRNGYSPDRRGRDISPDGRYGRGRSLSPYRRGRGSPDYGHGSNPTSRPEPRGSPKYERNESPLNGRYDSRSPRHGSRSPGEVE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele44g0013 365 SMART rrm1_1 207 273 IPR000504 GO:0003723
Lele44g0013 365 SMART rrm1_1 114 181 IPR000504 GO:0003723
Lele44g0013 365 MobiDBLite consensus disorder prediction 279 365 - -
Lele44g0013 365 MobiDBLite consensus disorder prediction 279 301 - -
Lele44g0013 365 FunFam Serine/arginine-rich splicing factor RS31 198 289 - -
Lele44g0013 365 Gene3D - 200 286 IPR012677 -
Lele44g0013 365 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 207 355 - -
Lele44g0013 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 277 IPR000504 GO:0003723
Lele44g0013 365 SUPERFAMILY RNA-binding domain, RBD 113 280 IPR035979 GO:0003676
Lele44g0013 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 185 IPR000504 GO:0003723
Lele44g0013 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 270 IPR000504 GO:0003723
Lele44g0013 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 174 IPR000504 GO:0003723
Lele44g0013 365 MobiDBLite consensus disorder prediction 1 24 - -
Lele44g0013 365 Gene3D - 104 199 IPR012677 -
Lele44g0013 365 CDD RRM2_AtRSp31_like 207 276 - -
Lele44g0013 365 FunFam Serine/arginine-rich splicing factor RS31 112 196 - -
Lele44g0013 365 CDD RRM1_AtRSp31_like 113 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele44g0013 Lele-ChrLele44 76444 80516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele44g0013 105 272 Eukaryotic Initiation Factors Gene Family AT4G34110 25.683 5.45e-09 55.8