Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1340 ATGGAACTAAATAAGCCGGCAATTTTGTTTGTTGCCAACCCCAGGGGGGCTCCAGCTGTGTTTACTCAACACATACATGCAGAATCAGCCAGTGGTGTTTTAAAAACAGGACAGGATGTACAGAATAACATCTCAATACAGCCAGGGAAAGAACTTTCTGCAGAGTTTGATCATGAAGGAATTGCTGGTAGAATAGAAACTGCTGCACCTGATTCCCTCCTAAAGCATGAAGGTAGGTTTGGATTTCATGGGGAGAATGGCCAAGTGAGATATGAAGATCTTACTAATATTCTGGGATTGAAGAAAATGGACTCTGAGAATCCTTTTGAAATTGCTGATCCTAACTTCACAAGAGTGCCAACTCAAGAGATAGAAAATGGGACTTTTGTTGATAAAAATAGCAAAAATCAAAAGGAAGATGGTAATGTTACACAAGGAGCGAGGAAGACTCTTGGTGAATCAGTTGGCGACCAAGCTGATACAGGAACACCTGGCTCTCCCTTTCTCAGAAAAGAATCCTCCTATTCCAATGAAGTTTCTGGTTTAGGAGTTTCAGATGATTCTCAATCTGGAAAAATTAAGTTACTATGCAGCTTTGGTGGAAAAGTATTACCAAGGCCCAGTGATGGGAAACTCAGGTATGTAGGGGGAGAGACTCGCATTATATCTATCCGAAAGGATATTTCGTGGCAAGGGCTTGTTAAGAAGACATTGGGTATTTGCAATCAACCTCACACAATTAAGTACCAGCTTCCAGGTGAAGATCTTGATTCTCTAATATCTGTCTCCTCTGATGATGATCTTCAAAATATGATAGAAGAATACCAAGGGCCTGAAAGGCACAAGGGATCTCAAAGACTTCGAACTTTCTTAATGCCCTTGAGTGAATCTGAAAAGGAATTGTCAAGAACTGATCAGCAGAGTAATCCTGATTACCAATATGTTGTTGCTGTGAATGGCATAGGGGACTATTGTCCAAGAATATATAGTTCAGGGCAGAGTTTGGCAAATGAAGTTGGTCCGTTAGGGGCAAATTTGAATTTTTCTCCAGACTTTCAGAAAAAATTTCCAGATGCACCGTTCTCTTCAGAGATCAAGGGTGGTGGTAGTGCTATACATCCAAATGATTTTTTTAATGATTCTCAGAATGTGCAGGGAACCTCCAATCAATATGAACATATTTCTTTTACTCCATTTCAAGGAGGAAATTTGAGCGCAGTTTATACACAATCTCAAGGTTATAGCTCATGCCAGGGAAGTGTTGCAAGTAGCTTATCCTTTATTACTGCCCAAGTGTCACCTGAGACATCCAATGTAAATGCTGCTGATAGCGGATACTCCCATCAAATGGCTACGACTTTCCTGAGTGACAATCACCCCTGCCATGGGAAGCTGTTCAGAAATAATCCTGGCAAGGAATTTATAACTGCTTCGTATGCTAATCGAAGTGACGGTTATAATGATGAAATTTTGAGGGAAAGGTCCATGCATCAATCAGGAAATCCTCTTTCTAGCCTGGGCAAGTCAGTTTGTCCACAGTCTGGATCTAATTGTATTCCTGATTCTCTACATTGCATACCTCATGCATTTTCTGATTCAAAGTTGCATGAGAATGGATTAAAGTCTGGTTACTGCTCTCAAGAAGGGATTGGTCAATTTTCCTCATTGAACCTTTCAATGGCTCAGTTGTCTTCTATGGTACCCTCAAGTGTTTCACATAGGGATCCTATGGAAATCCGGCATGATCCCCTTTTCATTTATCCACAAATACAAAGTAAGATACCGAATGTTGAGCAGGGTGAGTTGCAGAGACAGCAGGATTTTCTGTTTTCTTCCCCATCTGAAGTATGTTTAGGAGTGTGCGATCCTATTCAGAAGGATAACATTTTATACAGTAAGAGGAATCCTTTAGCTCAAACTGATTTAACTGCATCTAACTTTATAGAGCAGCAGTGTGGGGACAATACTGTGAATATAGAAAGCATGAAGAGAATTGAAGACAAAAATTCTCTTCAGAGTAAGGATAGCAATCGTCATGAGAGGGAATCACCTGCCATTGCTGTAGAGCATGTGAATGAATTGCATCTCCTGGACTCTTCTCCACCTTGTAATTTAAACATTAAGATTAATAAACAAAATCAGTTGGAGCAATCTTCTGACGGTATGATTTCTAAATCCTCTTGCGTGACAGGAATTTCCCAAAATAATCTGATTGAGAAGACCCCATCAGATTTTCTTGACATAAGCCACAGGACTAGTGATGGAAGGGAACGTGGTTTAACTGAAGGTTTAAATGGTGAGCTAGTATTTGATTTTTCTTGGACCAGAAAATCTGGGTTTAATGCTTCATCCCTAAAATGTGAAGGAAACTCTTGTGGTAAAACTTCTCTAATCGATTATTTGTTGGAGCTGTCCATGGACCCGGTTTCTCATAAACAGGCACAAGTTCAACCTTTTCAGAAGGATACAGATCTCTATGGAAATCCGACAGTAAGCTCAGATTTTTTGTATTCTTCAGTACTTCATGATGACCCTGGTCCAAGTTCAAATTTGCCTGTGAATGAACTACAGAACTCAAGCCAGAATATTGTGTTTAAAAGAGTATCTTCTCTCATTGATGATGACCTTGTAGCTAGTTCTAGTCGAATGGTTGATCAGTATAGTTGTGGAACTCTTGCCAATGAAACAAAAGTTGAAGATATCATGTTGGAGCAATCAAAAAATTTTCAAAAGTGTGACAATTCAAATAAAGTTGAGCCACTTATTACTATAGAAGATGTGACTGATGTTGTTCCTCCAAGCGTTGAGTCTTCATTGGTGCCCAACCCGCATATAGTGGTAGAAATTAGAAATGATGTTTTATCCCCATCTGCAACAGAGTTGGAGAGCACTATTCCGGATTCTGAACTTGAGGATTTTAAGGATGACGACGAAGACAAGAATGAATCCCTTACTGATGCAATGATAGCGGAAATGGAAGCCAGCATCTATGGCTTGCAGATAATTCAAAATGCTGATCTTGAAGAACTTCGGGAGTTAGGATCGGGTACTTATGGAACTGTTTATCATGGAAAATGGAGGGGAACGGATGTTGCTATAAAGAGAATTAAAAAGAGCTGCTTTTCAGGAAGATCTTCTGAGCAACAACGATTGACAAAAGACTTCTGGAGAGAGGCACAAATCCTCTCAAATCTTCACCACCCCAATGTGGTTGCGTTTTATGGGGTTGTACCAGATGGAGCTGGAGGAACCTTGGCAACTGTAACTGAGTATATGGTTAACGGTTCCCTTAGGCATGTCCTTGTCAAGAAGGATAAGTCACTTGATCTTCGTAAAAGGCTTATAATTGCCATGGATGCGGCTTTTGGAATGGAATACTTGCATTCGAAGAATATTGTTCATTTTGATTTGAAATGTGACAATTTACTTGTCAATCTGAGGGATCCACAACGACCCATATGTAAGGTTGGAGATTTTGGATTGTCAAGAATTAAACGCAACACCCTGGTATCTTGGGGTGTGCGAGGAACCCTTCCTTGGATGGCACCAGAGCTGTTGAATGGCAGTAGCAACCGGGTTTCTGAGAAGGTTGATGTTTTCTCATTCGGCATCTCTATGTGGGAGATATTGACTGGGGAGGAGCCTTATGCAGATATGCATTGTGGCGCTATTATTGGGGGCATTGTAAAGAATACTCTTCGACCACCAATTCCCCCACGTTGTGACCCTGAATGGAGGAAGCTTATGGAAGAATGTTGGTCACCTGACCCCGATACCCGACCGTCTTTTACTGAGATAGCTAGTCGTCTCCGATCAGTGTCCATGGCCCTTCAAGCTAAGCCTCATAATCAGGTGCGGCAGACAACACACAGTGTTTATTCCTGA 3885 0.4093 MELNKPAILFVANPRGAPAVFTQHIHAESASGVLKTGQDVQNNISIQPGKELSAEFDHEGIAGRIETAAPDSLLKHEGRFGFHGENGQVRYEDLTNILGLKKMDSENPFEIADPNFTRVPTQEIENGTFVDKNSKNQKEDGNVTQGARKTLGESVGDQADTGTPGSPFLRKESSYSNEVSGLGVSDDSQSGKIKLLCSFGGKVLPRPSDGKLRYVGGETRIISIRKDISWQGLVKKTLGICNQPHTIKYQLPGEDLDSLISVSSDDDLQNMIEEYQGPERHKGSQRLRTFLMPLSESEKELSRTDQQSNPDYQYVVAVNGIGDYCPRIYSSGQSLANEVGPLGANLNFSPDFQKKFPDAPFSSEIKGGGSAIHPNDFFNDSQNVQGTSNQYEHISFTPFQGGNLSAVYTQSQGYSSCQGSVASSLSFITAQVSPETSNVNAADSGYSHQMATTFLSDNHPCHGKLFRNNPGKEFITASYANRSDGYNDEILRERSMHQSGNPLSSLGKSVCPQSGSNCIPDSLHCIPHAFSDSKLHENGLKSGYCSQEGIGQFSSLNLSMAQLSSMVPSSVSHRDPMEIRHDPLFIYPQIQSKIPNVEQGELQRQQDFLFSSPSEVCLGVCDPIQKDNILYSKRNPLAQTDLTASNFIEQQCGDNTVNIESMKRIEDKNSLQSKDSNRHERESPAIAVEHVNELHLLDSSPPCNLNIKINKQNQLEQSSDGMISKSSCVTGISQNNLIEKTPSDFLDISHRTSDGRERGLTEGLNGELVFDFSWTRKSGFNASSLKCEGNSCGKTSLIDYLLELSMDPVSHKQAQVQPFQKDTDLYGNPTVSSDFLYSSVLHDDPGPSSNLPVNELQNSSQNIVFKRVSSLIDDDLVASSSRMVDQYSCGTLANETKVEDIMLEQSKNFQKCDNSNKVEPLITIEDVTDVVPPSVESSLVPNPHIVVEIRNDVLSPSATELESTIPDSELEDFKDDDEDKNESLTDAMIAEMEASIYGLQIIQNADLEELRELGSGTYGTVYHGKWRGTDVAIKRIKKSCFSGRSSEQQRLTKDFWREAQILSNLHHPNVVAFYGVVPDGAGGTLATVTEYMVNGSLRHVLVKKDKSLDLRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSWGVRGTLPWMAPELLNGSSNRVSEKVDVFSFGISMWEILTGEEPYADMHCGAIIGGIVKNTLRPPIPPRCDPEWRKLMEECWSPDPDTRPSFTEIASRLRSVSMALQAKPHNQVRQTTHSVYS 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1340 1294 Pfam PB1 domain 209 291 IPR000270 GO:0005515
Lele43g1340 1294 SMART PB1_new 207 294 IPR000270 GO:0005515
Lele43g1340 1294 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 212 294 - -
Lele43g1340 1294 CDD STKc_MAP3K-like 1013 1270 - -
Lele43g1340 1294 CDD PB1_UP2 196 292 - -
Lele43g1340 1294 SUPERFAMILY Protein kinase-like (PK-like) 995 1269 IPR011009 -
Lele43g1340 1294 PRINTS Tyrosine kinase catalytic domain signature 1089 1102 IPR001245 GO:0004672|GO:0006468
Lele43g1340 1294 PRINTS Tyrosine kinase catalytic domain signature 1197 1219 IPR001245 GO:0004672|GO:0006468
Lele43g1340 1294 PRINTS Tyrosine kinase catalytic domain signature 1126 1144 IPR001245 GO:0004672|GO:0006468
Lele43g1340 1294 PRINTS Tyrosine kinase catalytic domain signature 1241 1263 IPR001245 GO:0004672|GO:0006468
Lele43g1340 1294 ProSitePatterns Protein kinases ATP-binding region signature. 1013 1038 IPR017441 GO:0005524
Lele43g1340 1294 Gene3D - 211 293 - -
Lele43g1340 1294 PANTHER SERINE-THREONINE PROTEIN KINASE 259 1273 - -
Lele43g1340 1294 MobiDBLite consensus disorder prediction 149 174 - -
Lele43g1340 1294 Gene3D Phosphorylase Kinase; domain 1 1000 1094 - -
Lele43g1340 1294 SUPERFAMILY CAD & PB1 domains 208 294 - -
Lele43g1340 1294 Gene3D Transferase(Phosphotransferase) domain 1 1095 1293 - -
Lele43g1340 1294 ProSiteProfiles Protein kinase domain profile. 1007 1277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g1340 1294 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1095 1286 - -
Lele43g1340 1294 SMART serkin_6 1007 1275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele43g1340 1294 Pfam Protein tyrosine and serine/threonine kinase 1008 1270 IPR001245 GO:0004672|GO:0006468
Lele43g1340 1294 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1000 1094 - -
Lele43g1340 1294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1132 1144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1340 Lele-ChrLele43 21457507 21473339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1340 190 321 MAP Kinase Kinase Kinase AT1G16270 59.259 5.62e-40 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Lele43g1340 PK_Tyr_Ser-Thr 1.3e-63 CL0016