Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1337 ATGCAGATCTCCGTTCCTGTCAAATTCTTCGCCCTCACCTCTCTGCTTCTGGCCCTGCTTTTGTCTCCCGCCAACGCCTTCCATGACAAGAGGTTCAATGATTCTTCGAATGAGCATGCAGTAACAAATCCTGAGGAGATAGCCTCTATGGTCGATAAGAGCATACGCAATCATACTGAAAGAAGGAACTTGGGTTTCTTCACTTGTGGGACTGGGAATCCCATCGACGACTGCTGGCGCTGTGACCGCAACTGGCAGAGCCACCGCAAACGCCTGGCCAACTGCGGCATTGGGTTTGGACGCAACGCCATCGGAGGCCGAGACGGAAAGTACTACGTTGTGACTGACCCAAACGACGACGACCCCGTGAACCCAAAACCAGGCACCCTCCGCCACGCCGTCATCCAAGACCAACCCTTATGGATCGTGTTCAAAAGGGACATGGTCATCACTCTGAAACAAGAGCTCATCATGAACAGCTTCAAGACCATCGATGGGCGTGGCGTCAACGTCCACATTGCTTATGGGGCATGCATCACTATCCAATTCGTCACCAATGTCATCATCCACGGTCTGCATATCCATGACTGCAAGCCAACTGGCAACGCCATGGTTCGTAGCTCGCCTTCGCATTACGGATGGAGGACCATGGCTGATGGAGACGGAATTTCCATCTTCGGATCCAGCCACATCTGGGTTGATCACAACTCTCTCTCTAATTGTGCAGATGGTCTTGTTGATGCTGTTATGGGTTCAACCGCCATCACCATTTCCAACAATTACTTCACTCACCACAATGAGGTGATGCTCTTGGGTCACAGTGACTCTTACGTCAGAGATAAGCAGATGCAGGTGACCATTGCCTACAACCATTTCGGGGAGGGCCTTATTCAGAGAATGCCAAGGTGCAGACACGGGTACTTCCACGTGGTGAACAACGACTACACCCACTGGGAAATGTATGCAATTGGTGGCAGCGCTAATCCCACCATTAATAGCCAGGGAAATCGATATCTTGCCCCTCAGAACGCTTTTGCCAAGGAGGTGACAAAGAGAGTAGACACAGATTCAGGAGTATGGAAAAGTTGGAATTGGAGGTCAGAGGGAGACCTTTTGCTGAATGGTGCCTTCTTCACAGCATCAGGTGCTGGCTCTGGAGCTAGCTATGCCAGAGCTTCGAGTTTATCGGCCAAATCGTCTTCTGTAGTCGGTACCATCACCTCTGGTGCTGGTGTTCTTAGCTGCCGGAGGGGTTCTATGTGTTAA 1266 0.5111 MQISVPVKFFALTSLLLALLLSPANAFHDKRFNDSSNEHAVTNPEEIASMVDKSIRNHTERRNLGFFTCGTGNPIDDCWRCDRNWQSHRKRLANCGIGFGRNAIGGRDGKYYVVTDPNDDDPVNPKPGTLRHAVIQDQPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPQNAFAKEVTKRVDTDSGVWKSWNWRSEGDLLLNGAFFTASGAGSGASYARASSLSAKSSSVVGTITSGAGVLSCRRGSMC 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1337 421 Pfam Pectate lyase 156 336 IPR002022 -
Lele43g1337 421 FunFam Pectate lyase 72 414 - -
Lele43g1337 421 SUPERFAMILY Pectin lyase-like 50 416 IPR011050 -
Lele43g1337 421 SMART amb_all 147 344 IPR002022 -
Lele43g1337 421 PANTHER PECTATE LYASE 18-RELATED 39 419 IPR045032 GO:0030570
Lele43g1337 421 Gene3D - 72 414 IPR012334 -
Lele43g1337 421 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Lele43g1337 421 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Lele43g1337 421 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Lele43g1337 421 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Lele43g1337 421 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Lele43g1337 421 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Lele43g1337 421 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Lele43g1337 421 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1337 Lele-ChrLele43 21429413 21432690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1337 37 421 Polysaccharide Lyase AT4G13710 80.769 0.0 681