Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1334 ATGCAAAGTATAGGTGGTAATATGGTCATGGAGGAAGAAAACGCTTTGGATGTTAACGGAGGTGAGATCTGGCTTCAAGATGAACATGACGATCTTCTTGGTGTGAATGATGCCTCTATGTTCTATGCTGATTTCCCTCCTCTTCCAGATTTTCCGTGCATGTCATCCTCTTCGTCATCTTCATCAACTCCAGCACTTCAAATCAAGACCACCACGTGCTCCACCACATCTTCATCCTCTACCGCGACGTCATCATCGTCCTCTGCCGTGTCATGGGCAGTTCTGAAGTCCGATGATACAGAGGATAATCTTCCAGGGGAGGAGCCGCCGCTGCAGCCGCCACTATCAACCTTGGCCTCCACCGCTTCCACAGAGCTCCCTTTCCCGCCTGACAAATGTGCTGTCGAGATGGAGGAGCCTTTTCCGTACTTGGACATGTTAGAGATCAACGATTTCTTCGACCCTGCATTAGTTTTTCAAGATGAGGATTGCCCATTAGAAGAATATCCCCAGAATCAGATAGCGAGGCAGCAGGAGCAACATGCAACTACGCTGCAGCAGCAACCAGAGGATAACGATCCACTTGTGCTCTCTAATGATAATAACTGTGAAGAAGAGATTCAAGGAAAAGGAGGAATCCCAGATGGGGAAATGAGTGATGTGTTCTTGGAGTGGCTCAAAACGAACAAGGATAGCATCTCTGCGAAGGACTTGAGGAACGTGAAGCTCAAAAAATCAACCATAGAGTGTGCTGCTAAGCGCTTAGGAGGAGGAAAAGAAGCCATGAAGCAATTGTTAAAGCTTATTCTTGAATGGGTTCAAACTAGTCACCTTCAAAACAAACGGCGCTGTAGTAAGGAGAATAATATGAATAACAATAACGATAGTGCACCTACAAATTTCCTCACAAACTCTAGCTCTAATTCCAACCCAAATTTATTTGCAATGCCTCAGTCATGTCCATGGGTTTCTCCTCCACAGCCTTATGGGACAGATCCGGCAACTATGGTCGCTTTGCTGCCACCTTCTTATCCGGTGATTGGGTATCCGGGTGACCCATATTCAAATGGAGCTTCGAATAATATCAATTCTTACCAACATGCTAGTACTGAATATAACATGTTGGAAGCAGCCCATTCATGGCCTCCATCTCAGTTCACCGTTGCTGCCCACTGCAACCAGTCATATGGGGACAATAACGTTCACCAAGCTGGTCCACCAGTTGCGGCAGGATTTGGAGGCTATGTGAATCAGTATTCATATAATTATTTTCACGGCGTGGCGGCTGGTGATAAGTTAATGAGGTTAGGTCCCTTGGCGACCAAAGAAGCAAGGAAGAAGAGGATGGCGAGGCAGAGAAGGTATTTGACTCATCATAGGAGCCAGAAACACCATAGCCAACTACAGAATCATGATAATAATGATCCACTTGCAAGATTGGTAAGTGATTATAACTGCAACGGAGTTTCTACGAATCCGGCCAATTGGGTATACTGGGGGTCAATGGCCGGAGGAGCAGCTTCCATGGTTCCAGTAGTTCCGGCTGAACCCCGGCCGGCTTTGGATCGGACCGCCATGCAAACTCAGAATTATCAAACTAGAGTCCCATCAACAGATCAAAGGCGTCAGGGATTGAAGACGGAGAAGAACTTGAAGTTTCTTCTTCAAAAGGTGTTGAAGCAAAGCGACGTTGGTAGCTTGGGGAGAATTGTGTTGCCGAAAAAAGAGGCAGAAACCCACTTGCCAGAATTAGAGGCGAGAGATGGGATTTCTATAGCAATGGAAGACATTGGAACATCTCGCGTTTGGAACATGCGGTACAGATACTGGCCAAACAACAAAAGCAGGATGTATCTGCTGGAGAACACTGGAGATTTCGTGAAGGCGAATGGACTGCAAGAGGGAGACTTCATCGTGTTGTACTCGGATGTCAAGTGTGGCAAATTTGTAAGAGCTCTCTTGTTAATTTTGAACTGTAAATGA 1983 0.4624 MQSIGGNMVMEEENALDVNGGEIWLQDEHDDLLGVNDASMFYADFPPLPDFPCMSSSSSSSSTPALQIKTTTCSTTSSSSTATSSSSSAVSWAVLKSDDTEDNLPGEEPPLQPPLSTLASTASTELPFPPDKCAVEMEEPFPYLDMLEINDFFDPALVFQDEDCPLEEYPQNQIARQQEQHATTLQQQPEDNDPLVLSNDNNCEEEIQGKGGIPDGEMSDVFLEWLKTNKDSISAKDLRNVKLKKSTIECAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRCSKENNMNNNNDSAPTNFLTNSSSNSNPNLFAMPQSCPWVSPPQPYGTDPATMVALLPPSYPVIGYPGDPYSNGASNNINSYQHASTEYNMLEAAHSWPPSQFTVAAHCNQSYGDNNVHQAGPPVAAGFGGYVNQYSYNYFHGVAAGDKLMRLGPLATKEARKKRMARQRRYLTHHRSQKHHSQLQNHDNNDPLARLVSDYNCNGVSTNPANWVYWGSMAGGAASMVPVVPAEPRPALDRTAMQTQNYQTRVPSTDQRRQGLKTEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKFVRALLLILNCK 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1334 660 SUPERFAMILY DNA-binding pseudobarrel domain 554 649 IPR015300 -
Lele43g1334 660 ProSiteProfiles B3 DNA-binding domain profile. 555 657 IPR003340 GO:0003677
Lele43g1334 660 Gene3D - 545 653 IPR015300 -
Lele43g1334 660 SMART B3_2 555 656 IPR003340 GO:0003677
Lele43g1334 660 CDD BfiI_C_EcoRII_N_B3 553 649 - -
Lele43g1334 660 Pfam B3 DNA binding domain 556 648 IPR003340 GO:0003677
Lele43g1334 660 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 221 649 IPR044800 GO:0003700
Lele43g1334 660 MobiDBLite consensus disorder prediction 99 122 - -
Lele43g1334 660 MobiDBLite consensus disorder prediction 451 465 - -
Lele43g1334 660 FunFam B3 domain-containing transcription factor FUS3 551 654 - -
Lele43g1334 660 MobiDBLite consensus disorder prediction 451 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1334 Lele-ChrLele43 21412676 21415205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1334 14 650 B3 DNA Binding Superfamily AT3G24650 43.338 2.45e-137 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele43g1334 B3 8.5e-18 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1334 43 21412676 21415205 Lele43g1334 43 21412676 21415205 ECH
Lele41g0022 41 168352 171134 Lele43g1334 43 21412676 21415205 hybridization
Lele42g0027 42 201468 204502 Lele43g1334 43 21412676 21415205 hybridization