Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1321 ATGGTGGATAACATGGAAATCGACTCACCGTCAGAGTCCCAACCTCCCAAACCTCGAGATCGAATCATTCGGAGGCTTCTTCAATTTGGAGTTCCCAATGATCAACTTGATCAGTCTCTCCTCGTTGATTTTATCAAGGATAAAAAGTCGTTGATACCTGAACTAGTATCTGTTATATTACCTACGGATGAGGAAGTGGCTGAAGCACTGCAAGATTCTAAATTTGGTTCTCAAAAGTCCTCATTGGGTGTAACCATGAAGAAAAGATTCCATGAAAGCATGGTCTGGTTACAGTGGCTAATGTTTGAGGGTGACCCCGCCGCTGCCCTGAGGAACCTTTACAAACTGTCCATTGGGCAGCGTGGTGTTTGCGGGGCTGTTTGGGGACATAATGATATAGCATACAGGTGTAGAACATGTGAACACGATCCGACCTGCGCAATATGTGTACCTTGTTTTGAGAATGGGAATCACGAAGGCCATGATTACTTTGTGATATACACAGGCGGTGGTTGTTGTGATTGTGGAGATGTGACAGCGTGGAAGCGTGAGGGATTCTGCTCAAAGCATAAGGGTGCAGAGCAGATACAACCACTTCCGGAAGAGTTTGCGAACTCAGTGGAACCTGTACTTAATTCTCTTTTCAGGTGTTGGAAAGACAAGCTAACATTTGCAGCAACTGTCTCTCAGGAAAACTCTAGATCAAGCAACGCTGTTGTTGAAAGAAAGAAGGCGGCTAATGAGCTAACCTCTGCGATGGTTGATATGCTTTTAGAATTTTGCAAGCACAGTGAGAGTTTGCTTAGTTTTGTTGCTAGGTTGTTATTCTCTTCTGCTGGTTTAATTGCCATTCTGTTGAAAGCTGAGAGGTTTTTAACTGATGTTGTAAGAAAACTTCATGAGTTACTCCTGAAATTGCTGGGGGAACCTGTTTTCAAGTATGAGTTCGCTAAAGTTTTCCTCAATTACTATCCGACTGTCATAAAAGAGGCTATGAACGAGTGCAGTGACCTTCCTCTGAAGAGGTATCCATTGCTATCCACGTTCTCCGTGCAGATACTTACAGTGCCCACTCTTACCCCTCGTCTGGTGAAGGAAATGAACCTCCTTACAATGCTGTTGGGATGTTTGGAAGATATTTTCATTTATTGTGCTGGAGAAGATGGCCGATTACAGGTTGCAAGGTGGGGAAATTTGTATGAGACAACTATACGGGTTGTTGAAGATATTCGATTTGTTATGAGCCATGTGGTGGTTCCCAAATATGTCACCTATGATCAACAAGATATCTCAAGAATTTGGATGAGACTCCTGTCCTTTGTACAAGGGATGAACCCTCAAAAGAGGGAAACTGGTCAACATATAGAAGAAGAAAATGACAATGTCCATTTACCTTTTCTTTTAGGCCATTCTATTGCTAATATTCATTCTCTTTTGGTGGATGGGGCGTTTTCATATGCTAGCATGGGCGAGTTGGACAATGATATTATTTTGAGCTCAAATAAGCAAGAATCAGATGGAGGTAATTTACGACCTGCAACAGTGGCACGGCTTTCACAGGATAGCTCTGCATGTGGTATGACTGGTCGGAATAGTGCCTTTGCTTGTTCTTCAAAGGCTTCTGAGATAATATCTAACGCCTCTTCTCATCAGGTACTTCCCCATTCTGTCACATGGTTGATATGTGAGTGTTTAGGGGCCATTGAGAATTGGTTGGAAATTGAAAATAAGACTTGGTTACTTCCAAATACGTCTTCTCCAAACAGTGGTAGCATCTATGACAGCAATCTTTCCGCATTAAAGAGAACAATATCCAATATCAGAAAGGGTAAGATTTTTCGTAGGCTTGCAAGTTCAAGTGAAGATGATGGTAGTTGCTTGGCTTCTGACGCGGAAAACAGTGAACATACAATGAAGGATAGTAAACTGAAAATAAATGGTGAATCTGAGTCAGATAATACCGATATTTCATCTGGTTTCAATGATAGCACAATGGAAACAGATGTTCCTGCAGAATTGGGTGGCCTTCGTTTTTTGTCTTTGTCTGATTGGCCACAAATTGTCTATGATGTTAGTTCGCAAGATATCTCTGTCCACATTCCCTTGCATCGGTTACTTTCCATGCTGTTACAAAGGTCACTGAGAAGATATTTTGGTGAATCTGGAATGGTGGATGTGTCTGATGCTTGTTCTACTAATTCATTATCAACAATCTACACTGACTTCTTTGGACACGCTTTACAGAGCAGTCATCCTTATGGGTTTTCTTCCTATATAATGGAACATCCCTTGCGCATTAGAGTTTTCTGTGCTGAATTTCATGCCGGAATGTGGAGGAAAAATGGAGATGCTGCTCTTTTATCTTGTGAATGGTATCGGTCTGTTCGCAGGTCTGAACAAGGGCTGGAGCTTGATCTGTTTCTTCTTCAGTGTTGTGCTGCATTAGCTCCGCCAGATCTGTATGTCGGCAGAATTCTGGAGCGCTTTGGGCTTTCAAACTACCTATCCTTGAATCTTGAATGTTCAAGCGAGTATCTTATGTTTTGGACAGCTGAAGCAGGTTCTCTGTGTCTCACAAGGTATGAACCTGTTTTAGTCCAGGAAATGCTCACTCTTCTTATTCAGATATTGAAAGAAAGGCGCTTTTGTGGGATAAGTTCTTCTGAAAGCTTGCGAAGAGAACTGATTTATAAGTTAGGCATCGAAGATGCCACTCATAGTCAGTTGGTGAAGTCTCTTCCTCGTGATCTCTCCAAGTTTGAGCAGCTTCAAGAGATTATAGATACAGTTGCTGTATTTTCTAACCCAACTGGTTTTAATCAGGGTATGTATTCCCTGCGATGGTCATTGTGGAAAGAATTGGATTTATATCATCCTCGTTGGAATTCAAAGGATTTACAAGTTGCAGAAGAAAGATATTTACGCATCTGTGGCGTCTCTGCACTAACCACACAGCTTCCCCGTTGGACCAAAATTTATCCTCCTCTGGAAGGGATTTCAAGGATAGCCACTTGTAAAGTGGTTCTACAGATAATCCGCGCGGTTCTATATTATGCGGTTTTTACTTTTAAATCAGCTGAATCTCGTGCTCCTGATGCTGTTCTTCTAACTGCACTGCATTTACTGTCATTATCATTAGATATCTGTCTTCAGCAGAAAGAATTTACTGACAAGACATTTGATGATGAGACACAAATTCCCATAATAGCTTTGTCTGGAGAAGTAATTGGTGAAAGCTCTGTTTATGGTGTTGGTGAACAGAGCTTGTTATCACTTCTTGTTAATTTGATGGGTTTGCACAGGAAGGAAAGTGCAGACAACTTTGTAGAAGCAGGTGGTGACAACCTGTCTGCTTTAATTGAAGACTTACTGAAGAAGTTTGCTGAGATTGACAACAGATGCATGACTAAGTTGCAGCAACTTGCCCCTGAAGTTGTTAGTCATATATCTCAATGCCTTCCAACTAGAGACTTAGGTGACATGGTTTCAGCTTCCGATAGTGAGAAACGCAAGGCAAAAGCCCGGGAGAGGCAGGCTGCTATGTTGGAGAAGATGAGAGCTCAACAATCGAAATTTTTGGCAAGTGTCGATTCCACTGGAGATGATAGTTCCCAAGTTGATCGTGAAGATGACTTTGATACTGGACCTGATGCTGAAGAATCCACACAAGTTGTGTGTTCTCTTTGCCATGATTACAATTCGAAACTTCCCATATCTTTTCTGATTCTTCTACAGAAATCTAGGCTTGTCAGTTTTGTTGATAGAGGTCCCCCGTCATGGTCCCAACTTCGTTGGACAGATAAAGAACATGCGTCTGTTTTCAACCTTAAGGTGACAGATGCAATGGCAATGGACTGGACTTCAGGCACTTCTGGGTCTACTTCATCTTCTCACTTGGCCCAGTTGGTTGTAAATGCTGCCAACCAATTGGTCTCTAGTGGGCAGCGTGGTGAAGTCAATGCTTTTTTGCAATATGTAAAGGATCAGTTTCCAACATTGGGAAATATCCAGCTTCCTGATGCATCTTATGATGAAAAAGAGAAGATTCCATATACTTTTGAGACATTGGAACAAGATATGTACTCCTCCATTTGTGGAGAAATGAACGATGATAATAAAATTTCTTCTTCAGGAGGGGACCCAAACATTGGTAGAGATGCTGGATCTGTCTTGGTTGGAAAATACATAGCTGATATTGCAAGAGACATGTCGAAAAACTCTCCAGCATCTGAAAATGTTCAAAGTGAGAATACTGCTGTAGAATCTACTTCGCAGCACATGGCAAACGGTTCATTTGGCCCAACAGATTGTGATGGACTTCATCTTTCTTCTTGTGGCCATGCATTACATCAGGAATGCCTTGATCGTTATTTATCTTCGCTGAAGGAAAGGTCTGTCAGAAGAATAGTTTTTGAAGGAGGACATATTGTTGACCCAGACCAGGCAGGCATCTTTCTTTTGGGTGAATTTCTGTGCCCTGTATGCCGCCGGCTTGTAAACTGTGTCTTGCCTACTATACCTGGAAACTTAGAGAAGCCTTTGACGCAGCCTACAGGTTTAATTAATGGCTCACTGCAAGCTACAGATCCCGTGGCTGCATCAAGGAAAGAGATGTATTCACTCCGCCTTTGGCAAGCCTTGAAGATCTTGCAATCTGCTTCTAATGCTGTTGGGAAGGATGAATTCCAAAAAGCTGTTCCTTTGCGGCAGAGTGATAAAACAGGCCAAAATCTTGAGCATTTCTCTCGGATGTTGGCTAAAATGTATGTGCCAAACGAACAAGATAAATTATCAAGATCTGCAAGATTAAATCACTCAATGCTTATGTGGGACACTCTTAAGTACTCCATGATGTCAATGGAGATTGCTGCACGATGTGGAAAGACTTCTTTAACTCCAAACTATGCTCTTAGTACCATGTATGAAGAGCTGAAGTCTTCGAGTGGCTTTATTTTATCCTTGCTGTTGAAACTTGTTCAGAAGTCAAGGAGTAAGAATTCTCTTCATGTGCTTCAAAGATTTAGAGGTCTTCAACTCTTTGCAGAATCTATTTGTTCTGGAGTGTCTGAGAGAGATGATATGTTGTCTATCTTCAAACATTTTGAAGGGGACCTATCTAATTCCGATATTCTATTTTGGAGGCGAGCTTCTGATCCTGTAATTGCACATGACCCTTTTTCAACCTTGATGTGGATTCTCTTTTGTCTTCCATCCCCATTTTTGTCTTGTGAAGAATCTTTGTTATGTCTTGTGCATGCTTTCTACATAGTAGCTGTAACTCAGGCTGTTATTTTGTATTTCTCGAAAACCCAGCACAAATTAAGTGAATTAGGTGTTTCTGATTGCCTAATCACTGACATATATAAGTTTATGGGTGAATCTGGATGCTCTCAGCAGTATTTTGTGTCAAACTATTTTGACCCCAGTGCTGATGTTAAAGATGTAATTAGGAGGTTTACTTTTCCCTATTTGCGAAGATGTGCGCTGTTGTGGAAAATATTATATTCTTCTATTCCAGCACCATTCTGTGATGAGGACAATGTATTAGATGGATCATGGAGTTATACAAATGACACAATGGTTGGACCTAATGTTGACATGTTTGAGATTACTAAAATTCAAGAGCTTGAGAACATGTTTAAGATTCCTGCCCTTGATGTGGTTATGAAGGATGAATTTTCAAGATCTTCAGTCTCTATTTGGTGTCGTCAATTTTGCAAGGAATTTGAACTAGCTGGGGTTCAACGTACCATGCATTTAAACCCTGCAGTTCCATTTGAATTGATGAGATTGCCAAATGTTTATCAGGATCTTCTGCGGAGGTGTATCAAACAGCGCTGCCTTGAATGCAAATCTCTTCTTGATGAACCTGCATTGTGCCTGCTAGGACAACAATCCTACTACAAAGATCCTCCCGTCAAGCTCCCTGGCCCTCTCCTTACTTGGATGCTTTCGGATTTTGAAATGCGTCGAGGCAAACCTCTTTACCTGAATGAGGAACGTTATGCTGCCTTGACCTACATGGTTGCTTCTCATGGCTTGGACCGAAGTTCCAAGATTGCAAAGTTCCTCTTGCCGTTTGCAGTACAGTTTCTGCTTAAGGTTTGGAAGCTTGGCTCCTGTGGGATACTCTACCTTCTGGGTGTGGCTGTACAGCGAGGAGCGACTGCTTTGAAGGATAATCTGTGGAATTATGTGCTCACTCCGCCACATCTGTGGTTTAGCTTGTTGATCGAGGCAGCCATATCGTTGTGCCTCTTCTGCCTCTTCAGTTGGCGTAGTGATGCTCGCTGTCATGGTAGCAATCGCTGGAGCGGCGGAGTTCCAGACCAGAGATCTGAGTGGAGGCCTGGAGTTGTGAAGGAGTAG 6369 0.42 MVDNMEIDSPSESQPPKPRDRIIRRLLQFGVPNDQLDQSLLVDFIKDKKSLIPELVSVILPTDEEVAEALQDSKFGSQKSSLGVTMKKRFHESMVWLQWLMFEGDPAAALRNLYKLSIGQRGVCGAVWGHNDIAYRCRTCEHDPTCAICVPCFENGNHEGHDYFVIYTGGGCCDCGDVTAWKREGFCSKHKGAEQIQPLPEEFANSVEPVLNSLFRCWKDKLTFAATVSQENSRSSNAVVERKKAANELTSAMVDMLLEFCKHSESLLSFVARLLFSSAGLIAILLKAERFLTDVVRKLHELLLKLLGEPVFKYEFAKVFLNYYPTVIKEAMNECSDLPLKRYPLLSTFSVQILTVPTLTPRLVKEMNLLTMLLGCLEDIFIYCAGEDGRLQVARWGNLYETTIRVVEDIRFVMSHVVVPKYVTYDQQDISRIWMRLLSFVQGMNPQKRETGQHIEEENDNVHLPFLLGHSIANIHSLLVDGAFSYASMGELDNDIILSSNKQESDGGNLRPATVARLSQDSSACGMTGRNSAFACSSKASEIISNASSHQVLPHSVTWLICECLGAIENWLEIENKTWLLPNTSSPNSGSIYDSNLSALKRTISNIRKGKIFRRLASSSEDDGSCLASDAENSEHTMKDSKLKINGESESDNTDISSGFNDSTMETDVPAELGGLRFLSLSDWPQIVYDVSSQDISVHIPLHRLLSMLLQRSLRRYFGESGMVDVSDACSTNSLSTIYTDFFGHALQSSHPYGFSSYIMEHPLRIRVFCAEFHAGMWRKNGDAALLSCEWYRSVRRSEQGLELDLFLLQCCAALAPPDLYVGRILERFGLSNYLSLNLECSSEYLMFWTAEAGSLCLTRYEPVLVQEMLTLLIQILKERRFCGISSSESLRRELIYKLGIEDATHSQLVKSLPRDLSKFEQLQEIIDTVAVFSNPTGFNQGMYSLRWSLWKELDLYHPRWNSKDLQVAEERYLRICGVSALTTQLPRWTKIYPPLEGISRIATCKVVLQIIRAVLYYAVFTFKSAESRAPDAVLLTALHLLSLSLDICLQQKEFTDKTFDDETQIPIIALSGEVIGESSVYGVGEQSLLSLLVNLMGLHRKESADNFVEAGGDNLSALIEDLLKKFAEIDNRCMTKLQQLAPEVVSHISQCLPTRDLGDMVSASDSEKRKAKARERQAAMLEKMRAQQSKFLASVDSTGDDSSQVDREDDFDTGPDAEESTQVVCSLCHDYNSKLPISFLILLQKSRLVSFVDRGPPSWSQLRWTDKEHASVFNLKVTDAMAMDWTSGTSGSTSSSHLAQLVVNAANQLVSSGQRGEVNAFLQYVKDQFPTLGNIQLPDASYDEKEKIPYTFETLEQDMYSSICGEMNDDNKISSSGGDPNIGRDAGSVLVGKYIADIARDMSKNSPASENVQSENTAVESTSQHMANGSFGPTDCDGLHLSSCGHALHQECLDRYLSSLKERSVRRIVFEGGHIVDPDQAGIFLLGEFLCPVCRRLVNCVLPTIPGNLEKPLTQPTGLINGSLQATDPVAASRKEMYSLRLWQALKILQSASNAVGKDEFQKAVPLRQSDKTGQNLEHFSRMLAKMYVPNEQDKLSRSARLNHSMLMWDTLKYSMMSMEIAARCGKTSLTPNYALSTMYEELKSSSGFILSLLLKLVQKSRSKNSLHVLQRFRGLQLFAESICSGVSERDDMLSIFKHFEGDLSNSDILFWRRASDPVIAHDPFSTLMWILFCLPSPFLSCEESLLCLVHAFYIVAVTQAVILYFSKTQHKLSELGVSDCLITDIYKFMGESGCSQQYFVSNYFDPSADVKDVIRRFTFPYLRRCALLWKILYSSIPAPFCDEDNVLDGSWSYTNDTMVGPNVDMFEITKIQELENMFKIPALDVVMKDEFSRSSVSIWCRQFCKEFELAGVQRTMHLNPAVPFELMRLPNVYQDLLRRCIKQRCLECKSLLDEPALCLLGQQSYYKDPPVKLPGPLLTWMLSDFEMRRGKPLYLNEERYAALTYMVASHGLDRSSKIAKFLLPFAVQFLLKVWKLGSCGILYLLGVAVQRGATALKDNLWNYVLTPPHLWFSLLIEAAISLCLFCLFSWRSDARCHGSNRWSGGVPDQRSEWRPGVVKE 2122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1321 2122 Pfam Putative zinc finger in N-recognin (UBR box) 124 190 IPR003126 GO:0008270
Lele43g1321 2122 SUPERFAMILY "Winged helix" DNA-binding domain 889 974 IPR036390 -
Lele43g1321 2122 Gene3D - 885 978 IPR042065 -
Lele43g1321 2122 MobiDBLite consensus disorder prediction 1193 1218 - -
Lele43g1321 2122 FunFam Putative e3 ubiquitin-protein ligase ubr3 124 192 - -
Lele43g1321 2122 Gene3D - 124 192 - -
Lele43g1321 2122 ProSiteProfiles Zinc finger UBR-type profile. 122 192 IPR003126 GO:0008270
Lele43g1321 2122 PANTHER UBIQUITIN LIGASE E3 ALPHA-RELATED 1986 2021 IPR039164 GO:0061630|GO:0071596
Lele43g1321 2122 SMART push_1 122 191 IPR003126 GO:0008270
Lele43g1321 2122 MobiDBLite consensus disorder prediction 633 649 - -
Lele43g1321 2122 MobiDBLite consensus disorder prediction 621 662 - -
Lele43g1321 2122 Pfam Proteolysis_6 C-terminal 1588 1962 IPR044046 -
Lele43g1321 2122 MobiDBLite consensus disorder prediction 1406 1427 - -
Lele43g1321 2122 MobiDBLite consensus disorder prediction 2102 2122 - -
Lele43g1321 2122 CDD RING-H2_UBR1_like 1438 1504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1321 Lele-ChrLele43 21308493 21325354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1321 16 2020 Acyl Lipid Metabolism Gene Families AT5G02310 48.793 0.0 1731
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1321 43 21308493 21325354 Lele37g1313 37 22194043 22197901 CCT
Lele43g1321 43 21308493 21325354 Lele39g0099 39 674188 677155 CCT
Lele43g1321 43 21308493 21325354 Lele40g1147 40 21528300 21535580 CCT
Lele43g1321 43 21308493 21325354 Lele43g1321 43 21308493 21325354 ECH
Lele41g0038 41 257249 274180 Lele43g1321 43 21308493 21325354 hybridization
Lele42g0039 42 276644 293293 Lele43g1321 43 21308493 21325354 hybridization