Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1311 ATGCAATTCTCCCTTCGGAATCCATGGGGTGTTAATGTTGTTACTATTACCGCTTCAATTCAATCAAAGAATTTGAACTACAGTTTTAATGGCTATCAAGTGCCTGTCATTCCTAGAGCTTCGAGAACAACTAGGGGGAGGGGTATAGTCAAGAATAAGAGAGACGGCAATCGGATACAAGCTTTTGAAATTTTGGCTAGTGTAGCTGGCAACTTTCTGCAGGAGAATGAAAACTCCAATACCGACAATGCTGTTGCAGGAAAGGTTCCTGTCGGTTTTGTTGGAATTAACATAAAGGATAAACAAGAGGAAGAATCAGGGTCTTTTAAGAGTGATCTCTTTGAGAATGGATGTTGCAGTGAGAATGCCTCTGGCTCGGTCTCTAGTTTGCAAGGGAAGCATAATGACCAAAGGGTTGAACGCTGTTCATCTTGTCTTGGCAATCATCTTGAAGGCCAAGGGCAAAATGTTTTTGAGAAGGAAGCAGATGGACTGATAAAAGAGAATTATGTGAATGAGAAAATTGTTCATGTTACTGGCAGCTCGGCTGGAGTTACAGAACCTGACCACAGGGCTTCTAAAAGGGAAAGCTCAGAAAATTCTGTCGAGAAGCCTTCATTGGAGGGTCTTGGACATGGTTCCAGTGGTAGGAAATTATTTAATAGAGATGATGACGAAAACTTTGCTAGGTTTACTCAACCTAGCTCTAAGAATAAGAATTCTGGCCCCCTGCCAGATATGCCTTTCCAAAGAGTGAATAGTGTTTCTGGATCGAAAAGTCTAGATGTAGGCCAAAAGTCAAAGAATGGAAGCTTGTATGGAAGTGATTACAGTATTGATAGAGATAATTATATTCTTGAAAGCTCACAGAGGATGTATCCTTTTAAGAAGAGGAAGTTCTTCAACCAGACCTCATCGTCTACATCCAATAGGGGGTCTCATTTTCATGGCATATTCGATTCTTCTGACACCAGAGTTGATGTGAACTGCAGTTCAGCAATTGGAGCATCATCCTCTGTAGCTGGTGTTCAACAAGTACATACTAGGTCAAGGGATTGTAATGTGAAGCTTAGCATAAAATCTTTTAAAGTCCCAGAGCTTTTTATTGATATCCCTGAAACTGCAACTATTGGTTCATTAAAGAGGACAGTTATGGAGGCAGTGACAGCTATTTTGGGAGACGAACTGCATGTAGGTATTCTTCTTCAGGGAAAGAAGGTCCAAGATGACAGCAAAACTCTAATTCAGACTGGGATTTCTCAAGATGATAAGCATCATAGATTGGGGTTCATGTTGGAGCCAAGACATACTAAAATTACACCACCTTCATATAATGAAGACCCTTCTTTTCGAACCACTAGTTCGCATCGGGATATATCCAGGAAACCTGCATCTCTGATGCTACAACAAAGAACTTATAATGTCTCCCAAGAGCATTCCCTGATTAAATTTGAAAGTTGTGGTGAAGGTGACCTAAACGTGGTCCCATCTCTAGCGGATACTTCCCCTAACAATACCATGTCAAAGTGCCGTGCTCTAGTTGCTGTTCCGACTATTAACATGGAGGCACTAGCGGTCATTCCCTTCCGTCGTAAGCCTGGAAATCCTGACCTTGTTCAGCGTCGAATCAGGAGGCCTTTCTCTGTGTCTGAAGTAGAAGCACTGGTTCAGGCAGTTGAGAAACTAGGAACCGGAAGATGGCGTGATGTCAAACAGTGCGCCTTTGACAATGCAAAGCACAGGACTTATGTGGATTTGAAGGATAAGTGGAAGACATTAGTGCACACTGCAAGAATCTCCCCTCAGCAAAGGAGAGGAGAACCTGTTCCTCAGGAGCTCTTGGACAGAGTCTTAGCTGCTCATGCCTATTGGTCTCAACAGCAATGTAAGCATCAAGTCAAGCCTTTTTGA 1911 0.4249 MQFSLRNPWGVNVVTITASIQSKNLNYSFNGYQVPVIPRASRTTRGRGIVKNKRDGNRIQAFEILASVAGNFLQENENSNTDNAVAGKVPVGFVGINIKDKQEEESGSFKSDLFENGCCSENASGSVSSLQGKHNDQRVERCSSCLGNHLEGQGQNVFEKEADGLIKENYVNEKIVHVTGSSAGVTEPDHRASKRESSENSVEKPSLEGLGHGSSGRKLFNRDDDENFARFTQPSSKNKNSGPLPDMPFQRVNSVSGSKSLDVGQKSKNGSLYGSDYSIDRDNYILESSQRMYPFKKRKFFNQTSSSTSNRGSHFHGIFDSSDTRVDVNCSSAIGASSSVAGVQQVHTRSRDCNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVTAILGDELHVGILLQGKKVQDDSKTLIQTGISQDDKHHRLGFMLEPRHTKITPPSYNEDPSFRTTSSHRDISRKPASLMLQQRTYNVSQEHSLIKFESCGEGDLNVVPSLADTSPNNTMSKCRALVAVPTINMEALAVIPFRRKPGNPDLVQRRIRRPFSVSEVEALVQAVEKLGTGRWRDVKQCAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQCKHQVKPF 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1311 636 PANTHER TELOMERIC REPEAT BINDING PROTEIN 22 633 IPR031105 -
Lele43g1311 636 ProSiteProfiles Myb-like domain profile. 539 594 IPR001005 -
Lele43g1311 636 CDD SANT_TRF 545 595 - -
Lele43g1311 636 SMART sant 543 596 IPR001005 -
Lele43g1311 636 MobiDBLite consensus disorder prediction 181 267 - -
Lele43g1311 636 MobiDBLite consensus disorder prediction 188 202 - -
Lele43g1311 636 Gene3D - 535 635 - -
Lele43g1311 636 MobiDBLite consensus disorder prediction 251 267 - -
Lele43g1311 636 SUPERFAMILY Homeodomain-like 545 626 IPR009057 -
Lele43g1311 636 MobiDBLite consensus disorder prediction 436 460 - -
Lele43g1311 636 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 540 598 IPR017930 -
Lele43g1311 636 SUPERFAMILY Ubiquitin-like 350 435 IPR029071 -
Lele43g1311 636 Pfam Myb-like DNA-binding domain 544 593 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1311 Lele-ChrLele43 21239927 21244822 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele43g1311 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1311 43 21239927 21244822 Lele25g1252 25 8364994 8368405 ECH
Lele43g1311 43 21239927 21244822 Lele26g1264 26 8317193 8320701 ECH
Lele43g1311 43 21239927 21244822 Lele27g0831 27 16347726 16351111 ECH
Lele43g1311 43 21239927 21244822 Lele28g1256 28 8351355 8354864 ECH
Lele43g1311 43 21239927 21244822 Lele43g1311 43 21239927 21244822 ECH
Lele41g0048 41 350904 354512 Lele43g1311 43 21239927 21244822 hybridization
Lele42g0048 42 375503 378796 Lele43g1311 43 21239927 21244822 hybridization