Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele43g1301 | ATGGCTTCAGTGGGATCCTCCTATTGGTGCTACAGATGCAATCAGTTTGTTAGGGTTCGAATTGGGGCGGAAGAAACCTTGCTTTGCCCTGATTGTGGGTCTGGTTTTATAGAAGAAATCAGGACTCGTACTCACTCTCCTTTCCATCGATTCCCTTCACCATCAATGTATGTCGACGATGAGTCTAGCTCCGAGCAAGGAGCCAGTCCAAGAATCCGCCGTGGCCCGAGAAACGCCGGCGATCGATCCTCTTTTAACCCTGTTATCGTCCTCAGTGGACCCGCCGATGGCGGTGGCGGTGGAAATGAAGGGCTTGGTATTGAAAGAGGGAACTTTGAGCTTTATTACAATGAAGGTACAGGTTCGGGTCTTCGGCCGCTTCCTGCAAGTGTCACAGAGTTCTTAATGGGTGCTGGATTTGACCACCTTCTTGACCAGTTGACTCATTTAGAAGTCACGGGAATCGGACGATTAAATCAAACTCCGGCATCAAAATCTGCAATCGAATCGATGCCCATCGTCAAGATTGTTGCTACACATGTTTCGGCGGAATCACATTGTGCAGTTTGTAAGGAACCCTTCGAGCTTGACTCGGATGCTCGTGAAATGCCCTGTAAACACATTTACCATTCTGACTGTATCCTTCCATGGCTATCAATTCGCAATTCCTGCCCAGTTTGTCGCCACGAGTTACCTACTGAGATGCGTGGGAGTAGTAGTGGCAGAAACTCCCCTGTGTCCGACGGTGGAAGGGATGATCGTACTGTGGGATTAACCATATGGAGACTACCTGGTGGTGGTTTTGCTGTTGGAAGGTTCACTGGTGGAAGAAGAGCTGCCGAACGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTCAATAGTGTGGGGGTTCCACGGAGAATATCTTGGGAAACGAGTGTGAGGAGATCAAGGGAGTCTCGGGGATTAGGTAGTGCTTTTCGGAACTTCTTCTCACACTTCGGGTGGCTTAGGACTTCCTTCTCTCGTTCTTCCAGAACTGATTCAAATGTGAGCCGAAGAACTCGATCTAATACAATATTATCTAGATTCTCGAGAAGGCGCAACTAA | 1098 | 0.4827 | MASVGSSYWCYRCNQFVRVRIGAEETLLCPDCGSGFIEEIRTRTHSPFHRFPSPSMYVDDESSSEQGASPRIRRGPRNAGDRSSFNPVIVLSGPADGGGGGNEGLGIERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLTHLEVTGIGRLNQTPASKSAIESMPIVKIVATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTEMRGSSSGRNSPVSDGGRDDRTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSVGVPRRISWETSVRRSRESRGLGSAFRNFFSHFGWLRTSFSRSSRTDSNVSRRTRSNTILSRFSRRRN | 365 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele43g1301 | 365 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 29 | 49 | IPR013087 | - | |
| Lele43g1301 | 365 | FunFam | E3 ubiquitin-protein ligase RING1-like | 149 | 234 | - | - | |
| Lele43g1301 | 365 | Pfam | Protein of unknown function (DUF1117) | 256 | 360 | IPR010543 | - | |
| Lele43g1301 | 365 | Pfam | Ring finger domain | 186 | 228 | IPR001841 | - | |
| Lele43g1301 | 365 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 80 | 232 | - | - | |
| Lele43g1301 | 365 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 153 | 234 | IPR013083 | - | |
| Lele43g1301 | 365 | MobiDBLite | consensus disorder prediction | 342 | 365 | - | - | |
| Lele43g1301 | 365 | MobiDBLite | consensus disorder prediction | 51 | 86 | - | - | |
| Lele43g1301 | 365 | CDD | RING-H2_RNF181 | 187 | 231 | - | - | |
| Lele43g1301 | 365 | MobiDBLite | consensus disorder prediction | 231 | 252 | - | - | |
| Lele43g1301 | 365 | SUPERFAMILY | RING/U-box | 167 | 234 | - | - | |
| Lele43g1301 | 365 | ProSiteProfiles | Zinc finger RING-type profile. | 187 | 228 | IPR001841 | - | |
| Lele43g1301 | 365 | SMART | ring_2 | 187 | 227 | IPR001841 | - | |
| Lele43g1301 | 365 | Pfam | zinc-ribbon | 7 | 40 | IPR039525 | GO:0061630 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele43g1301 | Lele-ChrLele43 | 21172429 | 21173526 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele43g1301 | 126 | 242 | C3H Transcription Factor Family | AT5G01980 | 43.590 | 1.31e-26 | 108 |