Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1294 ATGGAAGAAGGTCAATGTTGGATTTGGACAAAGAGAAAGCACTCATCTTTGAGCTCCTATAATAATAATAATCAAAAGTTCAGCTATGGCGACTCATGGGAAGAACAAGCCTTTGCAGAAGATGAGCGTCTTGGTGGCTGTATTTGGCCTCCAAGATCATACTCTTGCAGCTTTTGCAGCAGAGAGTTCAGGTCAGCCCAAGCTCTTGGTGGCCACATGAATGTTCACAGAAGAGATAGAGCTCGCCTAAAGCAACCCCGGCCAAGTCCACACAATAAACAAGATGATCAAACCAGCAGTCTTCTTGATCATCAAAATTCTTTCACATCTTCTTATCTGGCTTATTCCAACGCTAACCCTAATTCTAATAATATTCTTCCTTCTGATCAGGCTAAATTAGCCCCTCCATTATCTTTGATTCAAGAGAATTCCCCACCATATGATTCTCGTGTTTCATGGGCAAACTTTGCCCAACAAAGATTATATTCTCGAAAGGATGAAAAGATCGTGTCCAAGATAGTAGATACTGGTTGTTATAAGGAAGAAGAAGCTGATATTGTGAGCTACAAGAGGAGAAGAATAACAGATGATTCATCATCAATTCCATTGATCTCCTCAAAATCAATTCCAGTTGTTGATAATATCAAGTCTCAGATGTTCGAGTTTATTAGTCCTAGTTCCATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTCACAGTCCTCCCAAGCTACTAGTGTTGATGGAATTTAATCGTCAAAGCACAAAGAAGTTATCAAAGCAGGTAAGATGGATCCCGGAAGAATCTGGAGCGAGATCTTATACTTGTGCGTTTTGCAAGAGAGGATTCTCAAATGCTCAAGCCCTAGGAGGTCACATGAACATCCATAGAATAGACAGAGCAAAGCTCATCAAACAATCATCTGAAGAAGAAAACTCGCTTTCTCTTGACATCTCAATCAAGAACCCTAGTACTTGTACTTCTGATGATGATGATCAGCCTCCTCCTTATAATAAGCCTTCTAATTCAGAAGAGAAGGTTTTGTTTCAGTGGGATTCTGAAACACTTCCTAGTAATCCCTTTCTTGCTGGGAATAATAATGAGGAGAACATTGAAATAGATCTTGAGCTTCGGTTAGGTCATCAACCCCACGAGGCCTCAACTTTGAGCACCAGAGAGTTTTTTTGA 1188 0.4049 MEEGQCWIWTKRKHSSLSSYNNNNQKFSYGDSWEEQAFAEDERLGGCIWPPRSYSCSFCSREFRSAQALGGHMNVHRRDRARLKQPRPSPHNKQDDQTSSLLDHQNSFTSSYLAYSNANPNSNNILPSDQAKLAPPLSLIQENSPPYDSRVSWANFAQQRLYSRKDEKIVSKIVDTGCYKEEEADIVSYKRRRITDDSSSIPLISSKSIPVVDNIKSQMFEFISPSSIEELDLELRLGHSPPKLLVLMEFNRQSTKKLSKQVRWIPEESGARSYTCAFCKRGFSNAQALGGHMNIHRIDRAKLIKQSSEEENSLSLDISIKNPSTCTSDDDDQPPPYNKPSNSEEKVLFQWDSETLPSNPFLAGNNNEENIEIDLELRLGHQPHEASTLSTREFF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1294 395 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Lele43g1294 395 MobiDBLite consensus disorder prediction 70 101 - -
Lele43g1294 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 301 IPR013087 -
Lele43g1294 395 SUPERFAMILY beta-beta-alpha zinc fingers 52 296 IPR036236 -
Lele43g1294 395 Pfam C2H2-type zinc finger 274 297 - -
Lele43g1294 395 Pfam C2H2-type zinc finger 54 78 - -
Lele43g1294 395 PANTHER OS07G0101800 PROTEIN 262 383 - -
Lele43g1294 395 ProSitePatterns Zinc finger C2H2 type domain signature. 276 296 IPR013087 -
Lele43g1294 395 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Lele43g1294 395 Gene3D Classic Zinc Finger 51 113 - -
Lele43g1294 395 Gene3D Classic Zinc Finger 252 331 - -
Lele43g1294 395 MobiDBLite consensus disorder prediction 314 343 - -
Lele43g1294 395 SMART c2h2final6 54 76 IPR013087 -
Lele43g1294 395 SMART c2h2final6 274 296 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1294 Lele-ChrLele43 21131709 21137594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1294 272 307 C2H2 Transcription Factor Family AT5G06070 69.444 3.51e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele43g1294 zf-C2H2_6 0.002 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1294 43 21131709 21137594 Lele43g1294 43 21131709 21137594 ECH
Lele41g0065 41 468812 474830 Lele43g1294 43 21131709 21137594 hybridization
Lele42g0067 42 482807 483532 Lele43g1294 43 21131709 21137594 hybridization