Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1275 ATGGAGGAGGGTTTTGAACCTTACCATGTTCCTCAGCAAAGCAGGAGAGACAAGCTCAGGGTCGGCTTCCACAACCAGCACTCTTCCCTTTCTACGGTGGCGTGCGCCGGTTTACTCCCGGTCACCGACCCTTCTCTTATTCCCTCCGATCTGCTAACGTGCGCCAGCAATAATCCTCAATCCTCCAATTTGCAAATAGACCCTGCAACTGTGCAAATTATCAACAGCAACTCTTTTCTTAACTTTCCTCTCGCTCAGGCCCTTCGAGCCGAGCCATTGTCTTTATCTCTCTCTTCTTCCCACAATCACTACAGTCACCAGGCCAATCTCAACAGTAACCCCCCGCTTGAGCTGAATCTTCAGAGATATGATGGCGGCTCCGTGAATATCCCGGCCAACGACGCCGCTTTGAGAAGCTCCGTCGTTCCGCTGGGGCCGTTTACGGGGTACGCTTCGGTGTTGAAGGGATCGAGGTTTCTGAAGCCAGCTCAGCAGTTATTGGAGGAGCTTTGCGACGTTGGGGGTCGTGAAATTTGGGCCGCGGAAAAGATGAAGGCGGACGCTTCGTTGATGGAACCTCCTCCGTCGTCGGAGAGCCTCGGCTCCGTCGATCCGCCACCGTCGACGCTTGGAGATGGTGGAGGGGAGGGTGGGAAGAAAAAGTCGAGACTGTTAACGATGCTTGATGAGGTGTACAGAAGGTACAGGCAGTACTATCAACAGATACAAGCAGTAGTAACTTCATTTGAGTATGTTTCAGGCCTGGGTAACGCGGCTCCTTATGCGATCTTGGCTATAAATGCCATGACCAAGCATTTCAAATGCTTGAAGACTGTGATCATGGACCAGCTTCAGTTCACTTCTAATAAGGCTCATTTTCACAATCTGAGCAACAAAAAGGACGAATTTCCGAGGTTTGTTGGAAATGTCGATCATAGAGGAGTAGGACCTTACAGCCAAATTAGGGATACTCAGAACCCCGAATTATTAGGGAACCAACCAATCTGGCGACCTCAACGTGGACTCCCCGAGCGAGCTGTGACTGTTCTTAGGGCATGGTTGTTCGAGCACTTTTTACACCCATATCCTACTGATACGGACAAGCTAATGCTGGCGAGACAGACTGGTCTGTCTCGTAGCCAGGTGTCAAACTGGTTCATTAATGCAAGAGTAAGGTTGTGGAAACCAATGGTTGAAGAAATACACATGTTAGAAACACGACAGTCTCAAAAGAATAATCAGAACCCAGATCAAGATGACAACAAAAATAAGCCCAGCACAAGTGTCAAGTTTCAAGATGATGCTCCTTTTAAACGCACCAGAAATTATGAACCTACGACTCATGATATCTCTTCAGTGACGAATCATCATCAGCTGCCTTGTAATGCAATAAGCAATGATAGTAATAATAATATTCAGGCGGTGAGTGTTGGAGCGGTGGCCAATAGCGTGTCGCTCACACTGGGACTCCACCAGAACAACGGCGGGCTTGCTTTATCTGAACCTTTTCCCATGAGTGAAGCTCTCCGTTTTGGACTTGCCCTAGAAGTACCGAGTAACGAAGAGTATGTAATGAGTGGTTCTGAATCGCAGAATCGGCATTATGGAAGAGGGCAGGTGATTGGAGGGCAACTTGTGCATGACTTTGTTGGCTAA 1656 0.4855 MEEGFEPYHVPQQSRRDKLRVGFHNQHSSLSTVACAGLLPVTDPSLIPSDLLTCASNNPQSSNLQIDPATVQIINSNSFLNFPLAQALRAEPLSLSLSSSHNHYSHQANLNSNPPLELNLQRYDGGSVNIPANDAALRSSVVPLGPFTGYASVLKGSRFLKPAQQLLEELCDVGGREIWAAEKMKADASLMEPPPSSESLGSVDPPPSTLGDGGGEGGKKKSRLLTMLDEVYRRYRQYYQQIQAVVTSFEYVSGLGNAAPYAILAINAMTKHFKCLKTVIMDQLQFTSNKAHFHNLSNKKDEFPRFVGNVDHRGVGPYSQIRDTQNPELLGNQPIWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLARQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQSQKNNQNPDQDDNKNKPSTSVKFQDDAPFKRTRNYEPTTHDISSVTNHHQLPCNAISNDSNNNIQAVSVGAVANSVSLTLGLHQNNGGLALSEPFPMSEALRFGLALEVPSNEEYVMSGSESQNRHYGRGQVIGGQLVHDFVG 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1275 551 MobiDBLite consensus disorder prediction 189 220 - -
Lele43g1275 551 Gene3D - 339 401 - -
Lele43g1275 551 SUPERFAMILY Homeodomain-like 338 403 IPR009057 -
Lele43g1275 551 FunFam BEL1-like homeodomain protein 9 339 401 - -
Lele43g1275 551 MobiDBLite consensus disorder prediction 406 453 - -
Lele43g1275 551 Pfam Homeobox KN domain 353 392 IPR008422 GO:0003677|GO:0006355
Lele43g1275 551 MobiDBLite consensus disorder prediction 407 422 - -
Lele43g1275 551 Pfam Associated with HOX 153 280 IPR006563 -
Lele43g1275 551 ProSiteProfiles 'Homeobox' domain profile. 333 396 IPR001356 GO:0003677
Lele43g1275 551 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 419 - -
Lele43g1275 551 SMART prehox3 148 282 IPR006563 -
Lele43g1275 551 SMART HOX_1 336 400 IPR001356 GO:0003677
Lele43g1275 551 CDD homeodomain 336 397 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1275 Lele-ChrLele43 20977654 20981848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1275 1 551 Homeobox Transcription Factor Family AT5G02030 43.350 2.12e-111 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele43g1275 POX 2.3e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1275 43 20977654 20981848 Lele43g1275 43 20977654 20981848 ECH
Lele41g0082 41 619891 624252 Lele43g1275 43 20977654 20981848 hybridization
Lele42g0084 42 628252 631928 Lele43g1275 43 20977654 20981848 hybridization