Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1261 ATGTCATCAACTATACAGATTTCCGTTGTAGATTTGGAGCAGGGAAGCCATCGAAGTGAAATGAGTGCCGAGGCTAGCATGTGTTTCTCTGATGTTGAAGAGGGTTCTTCCTATTCGCACTTCTATTCAACAAATGGTGGCTCATACGATGACTATAGTTTTCCTTTTGTTTCTGATCCTGAAGTTATTGAGGATGTTCGTGATTCTGCAAGAGCTTCTTCTGTCACTGAATGTTCAGTTGAAGTGGAAATTGAAAATGGGGTTCCTGAAATGAAGGTGCATTTGGATATATTAGAGAGAGAGTGTAGGATTTGTCACATGGGTTTAGAAAGTGAAAGCCTTGAATCCGGGGTTCCAATTGAATTGGGTTGTTCCTGCAAGGATGATCTTGCTGCTGCTCATAAACTCTGTGCTGAAACTTGGTTCAAGATTAAAGGGAACAGGACCTGCGAAATTTGTCATTCTGTGGCACAGAATGTTTTTGCTACGAATGAGGAGACAGCAGAGAATTTAAGTGACAGCAGCAATGCTATCACATTGTCCACACTTCCAGTTCCAGCATCCCCGGAAACTCCTCGAAGATTTTGGCAAGGCCGGGGATTCCTGAATTTGTTGCTTATTTTTATGGTTATCGCATTCGTCATATCATGGGCTTTTCACTTCCATTTTCATTCACCTTAG 681 0.42 MSSTIQISVVDLEQGSHRSEMSAEASMCFSDVEEGSSYSHFYSTNGGSYDDYSFPFVSDPEVIEDVRDSARASSVTECSVEVEIENGVPEMKVHLDILERECRICHMGLESESLESGVPIELGCSCKDDLAAAHKLCAETWFKIKGNRTCEICHSVAQNVFATNEETAENLSDSSNAITLSTLPVPASPETPRRFWQGRGFLNLLLIFMVIAFVISWAFHFHFHSP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1261 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 164 IPR013083 -
Lele43g1261 226 PANTHER ZINC FINGER, RING-CH-TYPE 17 223 - -
Lele43g1261 226 SUPERFAMILY RING/U-box 98 157 - -
Lele43g1261 226 Pfam RING-variant domain 102 153 IPR011016 GO:0008270
Lele43g1261 226 CDD RING_CH-C4HC3_MARCH 102 154 - -
Lele43g1261 226 ProSiteProfiles Zinc finger RING-CH-type profile. 94 160 IPR011016 GO:0008270
Lele43g1261 226 SMART ringv_2 101 154 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1261 Lele-ChrLele43 20849736 20852477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1261 64 225 C3H Transcription Factor Family AT5G05830 56.098 9.23e-58 180
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1261 43 20849736 20852477 Lele43g1261 43 20849736 20852477 ECH
Lele41g0093 41 734548 737323 Lele43g1261 43 20849736 20852477 hybridization
Lele42g0097 42 755093 757879 Lele43g1261 43 20849736 20852477 hybridization