Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1251 ATGCTTCAGATTCGGCTTAGTAAGTTACCGGCCTCGGAAGGTTCAGCAGGGGTGAGATCCGCACCTGTTGAGACTGCAATTGCATGCCCCGACCATCTAGTCCTGGCTGACCTGCCTGTGGCAAAGGGCATCGGTGCGGCCACTGCCACTTCCCTTATTAAGACTTTAGGACGGAGGTCCCGCCGCCAGCTTGGCAATAGAGTTCATTTCTGTGTTCGTTGTGATTTTCCCATAGCTATCTATGGACGATTGGGCCCTTGTGAGCATGCTTTCTGCCTTGATTGTGCTAGAAGTGACCCAATGTGCTGCCTGTGTGATGAACGAATCCAGAAGATTCAAACCATCAAAATGATGGAAGGAATCTTTGTTTGCGCTGCTCCTCGTTGTCTGAAGTCTTTCTTGAAGAAGACTGAATTTGAATCTCACGTCCAAGAAAACCACTCTGATCTTCTTCGGCCTAATGCAGAGAGTGAAGATGCAAATGAGTCAGAGGCACAGAGTGTTAGGCAATCTACAGCATCAGACTCCACTGCTCGAGGTCCCCCGTGGCCCGTTTTCTCCCCTGGTTCAAAGTCACAGCCTCATGATTGGGATGACAAAAGCTGTCAACAGCCAATGAGAGAGCAGCCCCCTTCAAGGCCAATTCAACAACCAAAGCCACCACTTTTTGGCCAAGCACCTAATCCTTCTTTAGATCCCCAATCAGGCAACCCTGGAGCTATTCAGCAGGACTTCCATCCACAAAGTTTTGACATGAAGCACTCCGAACGCGAACCCAACCTTCTCGTTGAGAGACAACAAGGAGTTACTTCACAGACCCCAATTCGTGATTATCCACCCATGCACTCTGTCCAGCCGCCCAATGTTGCCATGCAAATTAATCCTAATGCATTGCAGAAACGTCCTATGGCATTGAGTTACCCCCTTTACTCACAAGAGGGAGTTCATCCCTTTTATGCCACATCCTATGGCATGCCTAGGCAGAACTCATCTTCTGGAATAGGTTTAGATCAGAGTTCATTACTGGGATTCCCACCAGGTCCTGTAAGTGGCCCAAATTTTGCAGCAAATTATCCTCGGGCCTGGAACGCAAGAATGACTGGTGTGCCTTTTGATCAAGCTCAGGGCGGTATGATTATTGATCCAAGGGATGCTAAAGGGATGTAG 1167 0.4884 MLQIRLSKLPASEGSAGVRSAPVETAIACPDHLVLADLPVAKGIGAATATSLIKTLGRRSRRQLGNRVHFCVRCDFPIAIYGRLGPCEHAFCLDCARSDPMCCLCDERIQKIQTIKMMEGIFVCAAPRCLKSFLKKTEFESHVQENHSDLLRPNAESEDANESEAQSVRQSTASDSTARGPPWPVFSPGSKSQPHDWDDKSCQQPMREQPPSRPIQQPKPPLFGQAPNPSLDPQSGNPGAIQQDFHPQSFDMKHSEREPNLLVERQQGVTSQTPIRDYPPMHSVQPPNVAMQINPNALQKRPMALSYPLYSQEGVHPFYATSYGMPRQNSSSGIGLDQSSLLGFPPGPVSGPNFAANYPRAWNARMTGVPFDQAQGGMIIDPRDAKGM 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1251 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 148 IPR013087 -
Lele43g1251 388 ProSitePatterns Zinc finger RING-type signature. 87 96 IPR017907 -
Lele43g1251 388 MobiDBLite consensus disorder prediction 228 244 - -
Lele43g1251 388 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Lele43g1251 388 MobiDBLite consensus disorder prediction 164 178 - -
Lele43g1251 388 MobiDBLite consensus disorder prediction 144 163 - -
Lele43g1251 388 CDD RING-HC_HAKAI_like 69 105 IPR040380 -
Lele43g1251 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 377 IPR040383 GO:0016567|GO:0061630
Lele43g1251 388 MobiDBLite consensus disorder prediction 211 227 - -
Lele43g1251 388 MobiDBLite consensus disorder prediction 144 245 - -
Lele43g1251 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 122 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1251 Lele-ChrLele43 20790410 20792890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1251 1 366 C2H2 Transcription Factor Family AT5G01160 47.200 2.52e-92 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1251 43 20790410 20792890 Lele43g1251 43 20790410 20792890 ECH
Lele41g0107 41 804493 805196 Lele43g1251 43 20790410 20792890 hybridization
Lele42g0108 42 826359 835962 Lele43g1251 43 20790410 20792890 hybridization