Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1240 ATGAACAGGGGAATTGAAGTTTTCTCACCAGCTTCTTACCTTCAAAACTCGAATTGGTTGTTCCAAGAAAGCAAAGGAACAAAATGGACCCCAGAAGAGAATAAGCGGTTTGAGGATGCTTTGGCCTTGTACGACAAAGATACTCCAGATCGTTGGTTGAAAGTTGCAGATAAGGTTCCAGGGAAGACGGTGGGAGATGTGATTAGGCAGTACAAACAACTTGAAGAAGATGTTAGTGTCATTGAAGCAGGGTTGATCCCAGTCTCTGAGTATGATGATACCAGTTCTTTCACTTTGGAATGTTTCAATAACCAGGGCTTTGATGATTTCAAGCCATTCTATACTGTTGGTGAGAAAAGAGGTTCTTCCACTCGACCATCTGAGCAGGAAAGGAAAAAAGGAGTGCCATGGACTGAGGAGGAGCACAGGCAATTTCTGATGGGGCTGAAGAAGTACGGTAAAGGGGACTGGAGAAACATATCTCGTAATTTTGTGACCACAAGGACACCTACTCAGGTTGCTAGTCATGCTCAGAAGTATTTCATCAGGCAGCTTACAGGAGGCAAGGACAAGAGGAGATCAAGCATCCATGACATCACAATTGTCAACCTGGAAACCAAGTCTCCATCAGACAGTCACAGACCTTCTTCTCCTGATCGCTCAGTGAAGTTTGTGAATGATCTGCCTAAGAATCCAAGTTTCTCTACCATTGTTAAACAGGAGTATAATGACTCAACATTACCATACGAGTCCATGCCAATGATTTTCAATTCACCAAATGGAAACATGTTCATGCCACCCTATTTCGGGATTTCTTCAGTTGGATCTGGACCTCATCATCAGGAGCAGTGTTTACTCAGAGGTTCTCTCTAA 873 0.4341 MNRGIEVFSPASYLQNSNWLFQESKGTKWTPEENKRFEDALALYDKDTPDRWLKVADKVPGKTVGDVIRQYKQLEEDVSVIEAGLIPVSEYDDTSSFTLECFNNQGFDDFKPFYTVGEKRGSSTRPSEQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITIVNLETKSPSDSHRPSSPDRSVKFVNDLPKNPSFSTIVKQEYNDSTLPYESMPMIFNSPNGNMFMPPYFGISSVGSGPHHQEQCLLRGSL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1240 290 CDD SANT 136 181 IPR001005 -
Lele43g1240 290 Gene3D - 21 88 - -
Lele43g1240 290 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Lele43g1240 290 MobiDBLite consensus disorder prediction 123 138 - -
Lele43g1240 290 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Lele43g1240 290 SMART sant 133 183 IPR001005 -
Lele43g1240 290 SMART sant 25 77 IPR001005 -
Lele43g1240 290 CDD SANT 28 74 IPR001005 -
Lele43g1240 290 MobiDBLite consensus disorder prediction 206 226 - -
Lele43g1240 290 FunFam Transcription factor SRM1 21 88 - -
Lele43g1240 290 MobiDBLite consensus disorder prediction 118 138 - -
Lele43g1240 290 Gene3D - 135 185 - -
Lele43g1240 290 FunFam transcription factor MYB1R1 135 186 - -
Lele43g1240 290 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Lele43g1240 290 Pfam Myb-like DNA-binding domain 28 74 IPR001005 -
Lele43g1240 290 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Lele43g1240 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Lele43g1240 290 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 259 IPR043363 -
Lele43g1240 290 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Lele43g1240 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Lele43g1240 290 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1240 Lele-ChrLele43 20706559 20707854 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele43g1240 Myb_DNA-binding 2.1e-12 CL0123