Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1235 ATGACTTTAGGCTGTTCGAGATACCTGGAAAAGAACAGAATGAGAGATCTTACAAATCAGTCCAGGATTTGGAAATTTGTGGGGTCTGTATCAGCCATAAATGGACTGGTTTGCTTTGCTCTAAGCTCCACCTACAAAATGTCATTTGGAAAGTGGGGTTTCCGCGGTCTCCTTGCTTATCTATGCGTCGGTTTATTTATGTTGTTCCTCATGTTGCGGGCCAAGAGAATTCGAGTTTCACAGAAAGTCCAAGGTGTTGTGGCTGCTCTAATTTTTGATCTGATCTGTCTGATATCCGTCCTGCATGATAAACTTGAGACTGGTAAATCAGATGCAATGAGCATAATCTCTTATGGTTCATTTTCCTTAATGTCGCTGTCCATGTCAAGGAAGTTTGAGCTTGGATTCGAAACTGGCTTCTCCAGTTTCTTCCTGTCATTGTTCGTGGCACATCTTTGCAAAATCAACTGGAACCTCTTACCGGTGGCATTACTTTTCTGCTCTGCCATCATCATCCTTCGCCACTACTCAGAATCCGGAGTGCAGTTTGATTCCATCAGTCCATATCATCTTGGTCATCCAAATACAGCTGTAATAGAAATTGGACATGAGGACATCAATGTGGAGACCCAAGATTCCCCAGGGACGGGACAAGTTTCAGAGGAAATCATATTAGAGAATGAGCAAAATAACAAACCAGAGGAAGATCTTTCGTCTTTCCCAGCTGAATCCTCGGACCAATGTCATGTTTCATCAGGAAACAACATGCTCACTATTCAAAACGGCTGGATGCAGAGTTCCGGCGAGCCTGAATTAATTTCATCAGCCCCGCCACTAGATTGCGGTTGGCCCACACAATTGAACATGTGGCGATTCCAAGTTTCCGATGGTACACATTCCATCAACCCCCGGCTTATGTATGACCCAGTGAGACGCATATGGCTGTGTCTGGAAGAAGCAGAACTGGTGTTTCGTATGGTGGAAGAAGCAGACTTAGAACTGACGATGAGGCCCGAAATGAGAATATTTGTGAAGCCTCAAGCTGCCGATTCAGCCGATGATTTGAGGACTTCATCCCCAACATCAGTGCTTCAACTCAGGGAAGATGCAGAGACGGAAGAAGAAGAAGAAGAAGAGCCAGTTGGGAAGTGCCAAGATTACGTAGTTGGGCCTTCGAGGTCTGAAGATCTTACAATGAGAGACCTTATGTATCAGTCAACGATTTGGAAATTTGTGGGATGTGTGTCAGCCATAAACGGCCTGGTTTGCTTTGGTCTCAGCTCCTCCTACAAAAGTTCATTTGGAAAGTTGGGTTTTGACGGTCTACTTGTTTATGTATTGGTCGGTTTAACTTTGTCGTACCTCATCGTGCGGGCCAAAGAGAATTCAAGTTTCAGAGAAACTCCAAGAGAGAAATCTGATAGTTCTGAGATGGACGTGATAAAGTCTCAGCAAATTTCATCGAGGCCCATCGAGAAGGTCATAGTGCATCCTCTGGTTCTTCTCAGCATCGTCGATAACTACAATCGGGTTGCCAAGGACACTCGCAAACGTGTCGTCGGTGTCTTGCTCGGCAGTTCATTTAAGGGCACCGTCGATGTTAGCAACAGCTATGCAGTGCCATTTGAGGAAGACGACAAGGACCCAAGCATCTGGTTCCTTGACCACAACTACCATGAATCCATGTTCTCTATGTTCAAGAGAATAAATGCCAAGGAGCATGTTGTGGGATGGTATAGCACGGGCCCCAAGCTACGGGAGAACGATCTTGACATTCACAGATTATTCCACAATTATGTACCAAATCCTGTGCTGGTCATCATTGATGTCCAGCCCAAGGAGCTAGGGATACCTACCAAGGCTTATTATGACGTTGAAGAAGTAAAGGAGAATGCCACGCAAAAGAGCCAGAAGGTTTTTGTTCACGTGCCTTCAGAAATTGCTGCTCATGAGGTTGAGGAAATTGGAGTGGAACACTTGTTGAGGGATGTTAAAGATACAACCATCAGTACACTTGCAACCGAGGTTTCTGGTAAACTTACTGCGCTGAAAGGATTAGATGCTAGATTAAAAGAGATACGGGGTTACCTAGATCTGGTTATTGATGGAAAGCTTCCATTGAACCATGAGATACTTTACCATCTGCAGGATGTGTTCAACCTCCTTCCTAATCTCAACGTGTCAGAGTTAATCAAGGCTTTTGCAGTGAAAACAAATGACATGATGCTGGTCATTTATCTTTCTTCTCTGATCCGAAGTGTCATTGCACTTCACAACTTGATTAACAATAAGATGCTGAACAAGGAGCATGAGAAAGCTGAAGATGCCAAGCCAGTTACAATCCCTGCTGTCAGTGGAAGCTGA 2364 0.4454 MTLGCSRYLEKNRMRDLTNQSRIWKFVGSVSAINGLVCFALSSTYKMSFGKWGFRGLLAYLCVGLFMLFLMLRAKRIRVSQKVQGVVAALIFDLICLISVLHDKLETGKSDAMSIISYGSFSLMSLSMSRKFELGFETGFSSFFLSLFVAHLCKINWNLLPVALLFCSAIIILRHYSESGVQFDSISPYHLGHPNTAVIEIGHEDINVETQDSPGTGQVSEEIILENEQNNKPEEDLSSFPAESSDQCHVSSGNNMLTIQNGWMQSSGEPELISSAPPLDCGWPTQLNMWRFQVSDGTHSINPRLMYDPVRRIWLCLEEAELVFRMVEEADLELTMRPEMRIFVKPQAADSADDLRTSSPTSVLQLREDAETEEEEEEEPVGKCQDYVVGPSRSEDLTMRDLMYQSTIWKFVGCVSAINGLVCFGLSSSYKSSFGKLGFDGLLVYVLVGLTLSYLIVRAKENSSFRETPREKSDSSEMDVIKSQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHRLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRGYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVSELIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDAKPVTIPAVSGS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1235 787 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 490 770 - -
Lele43g1235 787 ProSiteProfiles MPN domain profile. 494 628 IPR037518 -
Lele43g1235 787 SMART pad1_6 493 627 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele43g1235 787 Gene3D Cytidine Deaminase, domain 2 486 671 - -
Lele43g1235 787 FunFam 26S proteasome non-ATPase regulatory subunit 7 486 671 - -
Lele43g1235 787 Pfam Maintenance of mitochondrial structure and function 651 762 IPR024969 -
Lele43g1235 787 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 492 601 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele43g1235 787 CDD MPN_RPN7_8 492 772 IPR033858 GO:0005838
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1235 Lele-ChrLele43 20653276 20661024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1235 496 725 Eukaryotic Initiation Factors Gene Family AT2G39990 29.487 2.03e-25 105