Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1220 ATGAAAAACGGCAAGGGGAAGGGAGCAGTTGATGATCGAATGGCTGGCAAGCGAAAGGCTGCACTAAAGCCTGACAAGAGCAGTGCACAAATGACCAAGAAGGCGAGGAATGCCAAGAAAGATCCCAACAAACCAAAAAGACCGCCCAGTGCTTTTTTTGTCTTCCTGTTGGAGTTCAGAAAGACCTTTAAGGCAGCAAATCCTCATGTGAAGGCTGTATCAGCTGTGGGGAAAGCTGGAGGACAGAAATGGAAATCTCTGACTCCTGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAACAAAGAAAGAGGAGTATGAAAAACTCATGAATGCATATAATAAAAAGCCGACAAACTCGGTCAATGACAAAGATGAGGAATCGGATAAGTCCAAGTCTGAAGTGAATGATGAAGAGGATGAAGCCAGTGGAGAGGAAGCACACCAAGAAGAGGAGGACGAAGAGGAGAATGACGAAGACGAGGATGAAGATGACGACTGA 501 0.4611 MKNGKGKGAVDDRMAGKRKAALKPDKSSAQMTKKARNAKKDPNKPKRPPSAFFVFLLEFRKTFKAANPHVKAVSAVGKAGGQKWKSLTPAEKAPYEAKAATKKEEYEKLMNAYNKKPTNSVNDKDEESDKSKSEVNDEEDEASGEEAHQEEEDEEENDEDEDEDDD 166
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1220 166 CDD HMG-box 45 110 - -
Lele43g1220 166 MobiDBLite consensus disorder prediction 76 166 - -
Lele43g1220 166 Gene3D High mobility group box domain 28 130 IPR036910 -
Lele43g1220 166 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 152 IPR031061 -
Lele43g1220 166 SUPERFAMILY HMG-box 31 117 IPR036910 -
Lele43g1220 166 MobiDBLite consensus disorder prediction 119 137 - -
Lele43g1220 166 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Lele43g1220 166 SMART hmgende2 44 115 IPR009071 -
Lele43g1220 166 Coils Coil 121 141 - -
Lele43g1220 166 MobiDBLite consensus disorder prediction 1 46 - -
Lele43g1220 166 Coils Coil 96 116 - -
Lele43g1220 166 MobiDBLite consensus disorder prediction 1 49 - -
Lele43g1220 166 MobiDBLite consensus disorder prediction 138 166 - -
Lele43g1220 166 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Lele43g1220 166 MobiDBLite consensus disorder prediction 96 111 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele43g1220 Lele-ChrLele43 20514921 20516537 Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele43g1220 HMG_box 5.7e-23 CL0114