Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1216 ATGAGTACTCTTCAACAAGGGGCACTGATCATGGAGAATGGCCCCATCAAGGGTTTGAGCAGGGAGCTGAGGCATGGCAGGACTGCTCATAACAGGTCCTCTTCTTCCTTGCGCAAGAAATCCGACTTAACCCTTGTTTCCAAGGTTCAATGGCGTTTACTCAGGAATTTGCTCGTACATTTCCAGGAGGTCATTCTTGGGACCAAGTTGTCGATTCTCTTTCTTGCAATTCCCGTTGCCATCGTCGCCCAAGTCTACAGGTTCGGTCGACCTTTGGTTTTTGCGATGAGCTTACTAGGACTTACACCACTAGCTGAACGCGTCAGCTTCTTGACAGAACAAGTTGCTTATCACACGGGTCCAACAGTTGGAGGACTCTTAAATGCAACATTTGGCAATGTCACAGAACTCATAATAGCAATATTTGCTCTCAGAAATAATAAAATAGCTGTGCTCAAGTATTCGCTCTTGGGTTCAATCCTTTCAAACCTTCTTTTAGTTCTTGGAACCTCTCTCTTCTGTGGTGGAATAGCACACATTAGAGTAGAACAAAAATTTGATAGGAAGCAGGTAGATATGAACTCACTTATGCTGCTGCTGGCATTCTTGTGCCACTTGCTGCCTGTGCTGTTCAGATATTCTGGTATCTCAGCTGCTCTCGATACAGCACCATCTCTCCACTTTTCAAGAGCTGCAAGTATTGTGATGCTGATAGCCTATTTTGCTTACCTTGTCTTTCAACTTTGGACCCATCGCCAGTTATTTGAAGCTGTGGATGAAGAAGATGATAATGATAATGTTACTGAAGCAGCTGTGATAGGATTTTGGAGTGCATTTGCTTGGCTTGCTGGATTGACTGTACTCATTGCTATCCTGTCTCAATTTGTGGTGGACACAATTGAGGGTGCTTCAGATTCATGGAGCCTGTCTGTCAGCTTCCTGAGCATCATCTTGTTGCCAATAGTTGGCAATGCAACTGAACATGCAGGAGCTGTCATATTTGCTTTGAAGAACAAGCTAGACATCTCATTAGGTGTTGCTTTAGGTTCGGCAACTCAGATTTCCATGTTTGTGGTTCCCCTGTGTGTGGTTATTGCTTGGATAATGGGCATCGAAATGGACCTTGACTTCAACCTCCTTGAGACCGGTTCTCTTGCTTTGGCTATTTTAGTCCCATCCTTCACTTTACAGGATGGGACTTCTCACTACATGAAAGGCCTTGTTCTCCTGCTCTGCTACGTTGTTATTGGGGCATACTTTTTTGTACAAAGAACACCGCCCAACCAAGCTGATTTTCCAAACATGATCCTTAAACCTGCCACTGAAGCAGCTTTGAGAGCTTAG 1344 0.4449 MSTLQQGALIMENGPIKGLSRELRHGRTAHNRSSSSLRKKSDLTLVSKVQWRLLRNLLVHFQEVILGTKLSILFLAIPVAIVAQVYRFGRPLVFAMSLLGLTPLAERVSFLTEQVAYHTGPTVGGLLNATFGNVTELIIAIFALRNNKIAVLKYSLLGSILSNLLLVLGTSLFCGGIAHIRVEQKFDRKQVDMNSLMLLLAFLCHLLPVLFRYSGISAALDTAPSLHFSRAASIVMLIAYFAYLVFQLWTHRQLFEAVDEEDDNDNVTEAAVIGFWSAFAWLAGLTVLIAILSQFVVDTIEGASDSWSLSVSFLSIILLPIVGNATEHAGAVIFALKNKLDISLGVALGSATQISMFVVPLCVVIAWIMGIEMDLDFNLLETGSLALAILVPSFTLQDGTSHYMKGLVLLLCYVVIGAYFFVQRTPPNQADFPNMILKPATEAALRA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1216 447 FunFam Vacuolar cation/proton exchanger 121 265 - -
Lele43g1216 447 Gene3D - 121 422 IPR044880 -
Lele43g1216 447 FunFam Vacuolar cation/proton exchanger 266 422 - -
Lele43g1216 447 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 425 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele43g1216 447 TIGRFAM caca2: calcium/proton exchanger 56 421 - -
Lele43g1216 447 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Lele43g1216 447 Pfam Sodium/calcium exchanger protein 278 420 IPR004837 GO:0016020|GO:0055085
Lele43g1216 447 TIGRFAM cax: calcium/proton exchanger 74 421 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1216 Lele-ChrLele43 20495459 20498443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1216 10 432 Antiporters AT2G38170 67.593 0.0 550
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1318 37 22238515 22239942 Lele43g1216 43 20495459 20498443 CCT
Lele43g1216 43 20495459 20498443 Lele43g1216 43 20495459 20498443 ECH
Lele41g0143 41 1081978 1085009 Lele43g1216 43 20495459 20498443 hybridization
Lele42g0142 42 1129820 1133464 Lele43g1216 43 20495459 20498443 hybridization