Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1211 ATGCAAGACCCACAGCATTCTGCCACTGCGATTCCTTCTTCTTCTTCCTCTTCTTCTTCCGCTATTGCTCCGTCGTCTTCGAGCAATTCACAAGTCCGACAAGAGGAGCACGGAATCGGCCATCCTCCATTTCAGTCACCTGAGTCCGATGCACAAACCCAGCATATGCTCCTCAACTTTGGAGCACTCAATTGGGATTTCCTCAACGCGCCTTGGCTTGCCAGGGATGATGCCTGGTCTTGTGTTGTGGTACTCTTGACCTTGTGGTTATTCGGTACTGAGCATTCCAGTTGGTTTCAATTATGCTTGAAGATTCTACAATTTCCATAAAACTTGGTTGGGTCAGAGCCAGGAATTATGCTATATGGTACGTACGGATCTCCATCTCTTGATGTTGTTACCAACTGGGAAGAAAGTTATAATGCATCCATTTCATCTTTTACAAGCAAGGCAAGGGATGTTGGCCTTACCCAGTGGCTTGAAGACCTATCATATCCTAATAGCACTGTCTTCTGGAACGTAGTCCATGGAACTGGCATGATTACGCAAGACATATTTCTTTCATCAAGCTATTACGTGATAGCGAGAAATTTGAATGAGGAAGTGGAGGTCAAATTGGGTATCAGAGTAAGAGCCTCCTTGTACAATACAAGCAAAGCTTACTACAAATGTGCTTTGACCAATAACTCTTGTGGTGTTAACATCTTCTTTCCAGATGGGAATACAGCTATTTTAACTTCTGATTCACAACAGAGTGCTTCAAGGGATGAGTGGCGGGTCAAATTGTCCTATGGACCAAGATGGATATCATATATTATTGGCATTGGCGGAATAACTTTGCTGATGTATATGAGCTTCACCATAATAGTGAAGTTCCAGCAAGCCCTAGCAAACGGAGCAGGAGGTCAACTTGGGGAAACAGCAACTCAGATAGCCCCTTTGCTTTCTCACAAAGATGACGATCTTTCAAGTTGGGGTTCATCTTATGATTCCATGTCACGCGATGAGGAGGATCTTGACTTTCTTACAGTGGGTTCCATTGATGGAAAGTCTTTAGGTGAAGGCGAAACCAGTAATAATACCAGACGTCTTTGTGCTATTTGCTTTGATGCTCCAAGGGGCTGCTTCTTCCTTCCATGTGGACACTGTGTTGCTTGTTTTGAATGTGGAAACAGGATAGTAGAAGCAGATGGGACTTGCCCACTTTGTCGTAGGAACACCAAGAAAATAAGGAAGATTTTTAATGTCGTTATGATGTATCAGGTGAGCCCAGTTTTTGATACCTTCCTGTCGATGAGGTCCTTCCCTTCTATTCCTCGGACCGGTGAATAG 1332 0.4399 MQDPQHSATAIPSSSSSSSSAIAPSSSSNSQVRQEEHGIGHPPFQSPESDAQTQHMLLNFGALNWDFLNAPWLARDDAWSCVVVLLTLWLFGTEHSSWFQLCLKILQFPXNLVGSEPGIMLYGTYGSPSLDVVTNWEESYNASISSFTSKARDVGLTQWLEDLSYPNSTVFWNVVHGTGMITQDIFLSSSYYVIARNLNEEVEVKLGIRVRASLYNTSKAYYKCALTNNSCGVNIFFPDGNTAILTSDSQQSASRDEWRVKLSYGPRWISYIIGIGGITLLMYMSFTIIVKFQQALANGAGGQLGETATQIAPLLSHKDDDLSSWGSSYDSMSRDEEDLDFLTVGSIDGKSLGEGETSNNTRRLCAICFDAPRGCFFLPCGHCVACFECGNRIVEADGTCPLCRRNTKKIRKIFNVVMMYQVSPVFDTFLSMRSFPSIPRTGE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1211 443 MobiDBLite consensus disorder prediction 1 35 - -
Lele43g1211 443 MobiDBLite consensus disorder prediction 1 49 - -
Lele43g1211 443 Pfam Domain of unknown function (DUF4793) 180 284 IPR032010 -
Lele43g1211 443 FunFam E3 ubiquitin-protein ligase APD2 354 415 - -
Lele43g1211 443 PANTHER OS05G0521000 PROTEIN 73 415 - -
Lele43g1211 443 SUPERFAMILY RING/U-box 364 415 - -
Lele43g1211 443 Pfam Zinc finger, C3HC4 type (RING finger) 362 409 - -
Lele43g1211 443 ProSiteProfiles Zinc finger RING-type profile. 365 404 IPR001841 -
Lele43g1211 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 423 IPR013083 -
Lele43g1211 443 SMART ring_2 365 403 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1211 Lele-ChrLele43 20449768 20455176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1211 364 420 C3H Transcription Factor Family AT1G62370 40.351 4.34e-06 45.8