Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1209 ATGGCTTCTAGTCCGCGCACCGTGGAGGAAATCTTTAAGGATTATGGTGCTCGAAGAGCCGGTGTTGTTCGTGCTTTGACTCAAGATGTCGATGAATTTTACGGACTCTGTGATCCAGAAAAGGAGAATTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTCCCCCCGGAGCTTCCAGAGCCAGCTCTTGGAATCAATTTTGCTAGGGATGGCATGATTCGCAAGGACTGGCTTTCTCTTGTCGCTGTTCACAGTGATTCATGGCTGCTTTCTGTGGCATTTTATCTTGGGGCCCGTCTCAACCGCAATGAAAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGGCTATAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCCAGGGGCAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAATCCGAAATTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCACAGCGAAACTCTTTGCGGTAGCTGTGGTGGAAATTACAATGCAGACGAATTTTGGATCGGCTGCGATGTCTGTGAGAGGTGGTTCCACGGGAAATGTGTGAAGATTACCCCTGCCAAGGCTGAGAGCATAAAGCAATACAAATGTCCATCCTGCATGAGGAGGGGTAAGCCCTAG 711 0.4782 MASSPRTVEEIFKDYGARRAGVVRALTQDVDEFYGLCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMIRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKAIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMRRGKP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1209 236 Pfam PHD-finger 184 232 IPR019787 -
Lele43g1209 236 MobiDBLite consensus disorder prediction 146 163 - -
Lele43g1209 236 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Lele43g1209 236 PANTHER CPG BINDING PROTEIN 4 232 IPR045104 GO:0006355|GO:0042393
Lele43g1209 236 MobiDBLite consensus disorder prediction 139 174 - -
Lele43g1209 236 FunFam PHD finger alfin-like protein 176 232 - -
Lele43g1209 236 SMART PHD_3 183 231 IPR001965 -
Lele43g1209 236 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Lele43g1209 236 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Lele43g1209 236 CDD PHD_AL_plant 183 233 IPR044104 -
Lele43g1209 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 231 IPR013083 -
Lele43g1209 236 SUPERFAMILY FYVE/PHD zinc finger 172 234 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1209 Lele-ChrLele43 20440854 20443593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1209 2 230 Alfin-like Transcription Factor Family AT5G05610 79.565 5.53e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele43g1209 Alfin 8.1e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g0150 41 1143856 1146481 Lele43g1209 43 20440854 20443593 hybridization
Lele42g0149 42 1182121 1184891 Lele43g1209 43 20440854 20443593 hybridization