Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1190 ATGGAAGGAAGAAAGGAAGGCTCAGAATGCTCCAAAACAAGCCCTTCTAGTTATAATGATTGCAACGAATTATTATTAGAAGAAGCGTGCGAGAGCGAGAGCGAAACCAATGAAGAGGAAGAGGAAGAAGAAGGTAAGAAGAATATGAACAATAATGGAGGAAGCTCAAGCAATAGCACAGTGGAAGAGACGACGGAGAAGAAGCCGTCGGTGAGGCCTTATGTGAGATCCAAGATGCCAAGGCTCCGATGGACTCCTGATCTTCACCTTCGCTTTGTTCATGCCGTTCAAAGGCTAGGAGGAGAAGAGAGAGCAACACCAAAGTTGGTTCTGCAATTAATGAACATCAAAGGCTTGAGTATAGCGCATGTTAAGAGTCATCTACAGATGTATAGGAGCAAGAAGGTAGATGATCCAAGCCAAGTAATGGCTGATCATCATAGGCAGCTTGTAGAAAGTGGAGACAGAAATATCTACAATCTCAGCCAAATTCCCATGCTTCAAGGTTATAATCCCTGCCAAACTTCAACCTTCAGATACGGATATGGGGATAAGGCCTCTTTGGGTGTGTATGACAAAATGGTTCGGAGCCCTTTCATGGGTCGCAGTCTGATTGATCATCATGAATCCGGGTCGTCTGGGTTTCACAGCATTTTCCAGGTGGACCCTTCAAATTTTCTGAAGCAACCTTCATCATCATCAACAAATAAAGATCATCAAGTTCTCTCATTTGGTGGCCATCCTCACGAACCCATATACATTGGAACCAGATTGAGCCACCAGGATAACACTGATCTTAACTCATTATTGATGACCAACGTAGGACCAACAAGAGCAGAAGAAGAACGGTTTCTTACTATTATGAAGGATCATCATCAGGATCAAACAAAGACGCTGAAAAGAAAGGCTTTTGAAGATCATCATACGGATCATCATCTCCATCATAATAATCACCATCTTGATTTGGATCTGTCACTCAAGTTAAATTCAAGGGCTGATATTGATTATAATGCACAGAAGAATCGTTTGGAGGAGATCAATGATGAAGTTGATAGCAATCTCTCACTGTCTTTGTATTCTCAAATTTCCTCGTTTTCTAATACTAATAATAATAAGGAAGGAGAACACAGTGAAAAGGAGAAATCAAGGAGGGAAAGGGCTAGTACACTGGATCTGACTATATGA 1185 0.416 MEGRKEGSECSKTSPSSYNDCNELLLEEACESESETNEEEEEEEGKKNMNNNGGSSSNSTVEETTEKKPSVRPYVRSKMPRLRWTPDLHLRFVHAVQRLGGEERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVDDPSQVMADHHRQLVESGDRNIYNLSQIPMLQGYNPCQTSTFRYGYGDKASLGVYDKMVRSPFMGRSLIDHHESGSSGFHSIFQVDPSNFLKQPSSSSTNKDHQVLSFGGHPHEPIYIGTRLSHQDNTDLNSLLMTNVGPTRAEEERFLTIMKDHHQDQTKTLKRKAFEDHHTDHHLHHNNHHLDLDLSLKLNSRADIDYNAQKNRLEEINDEVDSNLSLSLYSQISSFSNTNNNKEGEHSEKEKSRRERASTLDLTI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1190 394 FunFam Myb family transcription factor 78 136 - -
Lele43g1190 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 136 IPR017930 -
Lele43g1190 394 Gene3D - 79 136 - -
Lele43g1190 394 SUPERFAMILY Homeodomain-like 78 134 IPR009057 -
Lele43g1190 394 Coils Coil 329 349 - -
Lele43g1190 394 MobiDBLite consensus disorder prediction 372 394 - -
Lele43g1190 394 MobiDBLite consensus disorder prediction 1 74 - -
Lele43g1190 394 MobiDBLite consensus disorder prediction 365 394 - -
Lele43g1190 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 56 289 - -
Lele43g1190 394 MobiDBLite consensus disorder prediction 49 64 - -
Lele43g1190 394 Pfam Myb-like DNA-binding domain 82 132 IPR001005 -
Lele43g1190 394 MobiDBLite consensus disorder prediction 26 42 - -
Lele43g1190 394 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 80 135 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1190 Lele-ChrLele43 20282761 20284454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1190 30 141 G2-like Transcription Factor Family AT2G42660 58.929 8.36e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele43g1190 Myb_DNA-binding 1.8e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1190 43 20282761 20284454 Lele43g1190 43 20282761 20284454 ECH
Lele41g0170 41 1355721 1357368 Lele43g1190 43 20282761 20284454 hybridization
Lele42g0172 42 1408048 1409748 Lele43g1190 43 20282761 20284454 hybridization