Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele43g1187 ATGGAGCCTTTGATACTTGAGCCGTCCTGGTCGTTCTATGAAGGCATAAGCTCAACTTTTGATCAAGTTGAGCACTTTGACTTCAATGTGGATACTCCTTTGTTCACTGCTTCAGAGGATGCTTCTTCTTCAGAGATTACCTCCATGGTTCCCTTTCCTTCTACTTTCTTCTCTAATGATCATGTCTATTGTCCAATTGACGAGGACAACCTTCAACTCCCATCATTGATTGATGATTTCTCCATGGATCTTGATGCTTTTGATCCCACTTTGAGTTCTCAAAGTCTGGGAATCCTTGGATACGCACAAGAAAATGTTTGGAGTCCAACCCCATCGATGCAATCAGACATGTCCACAGTACTACAAGCACAGCCATCACTGATGATACCAGAACAAGACAGGGAGATGGAGAACCAGTTGAGTCTTCCTCATCTTCTGGAAGCTATTGGAGAATCCTTAGAGCAAGGACATAACACACTTTCACAAGTGATTCTGAGATGTATCAGCCACAAAGTAAGCCCTGTAAGTGATCCTGTTGAACGTCTGGCATTCTATTTGTCCCAAAATCATGAAACTACAGAGCAGGGGACTTTCATCAAACAGGAGGCGCGCAAGAGCTTCCACGATGCTTTCAAGGCTATCTACCAAGGCCTTCCACATGGAAGAATTGCTCATTTTGCAGCCAATTCAACAATTCTAGGATCTATACCATCTGATTCAGATGTCATACATATCATAGACTTTGATATGGGAGAAGGGGGTCAATGGCCTCCATTGATGGAGGCTATCGCTCAACAGCACATAACTTTGAAACTGAACGCAATCAGATGGGAAGAAGAGGACAGTCCAGATCTTGATTGTGTTTCAACTCAATGGAAATTTGAAGATATCAGAAGGAACCTCCATGAGCATGCCAAGTCATGTGGTTTGAAGTTGAAGGTAGAGGAACAGAGTATAGAGGAATTGGTGACAGAGCTCAAGAAATTGAACAAAAGAGGTGGAAATGGAAATGGATTAAGAAATTTCATGGCCTTCAATTGCATGGTGGGTCTCCCACACATGGGTAGGATCAGAAGTAGGAGACATGTTTCGGAATTTCTGAGAGTAGCGAAGGATTTCATCAAAAGCTCACCTTCAAACAGGGGAATCATAGCTTTCGGCGATGGAGAAGCCTGTGAGAAACTCAGAAACAGCACAAACTTCATGTCATTCTTTAATGGCCATTTGGTGCATTACCATGCTTTATTAGAATCCATGGAATCAAATTTCCCATTCCAATTCTCAGAGGCAAGAACAGCAATGGAGAATCTATTCGTGGCACCATATATATCAAGTGAGGGATGGTTTCAGAAGTGGGAGGAGATGAGACAATTAGATCAAAATCTGCAATCAGAAACTGAGTTAGAGGGTCGAAGCTTGGGGGAAGAGACATTAATGGAAGTTGCAGAGACGATGAGAGGAATCAAAGGGTCGTATGAGGTCAAGATTGAAGGCAAAAATGGCAATGAAATGGTTCCTCAATGGAAAGGAACACAGCTTATGAGAATTTCAGTGTGGGGAAACTAA 1566 0.4259 MEPLILEPSWSFYEGISSTFDQVEHFDFNVDTPLFTASEDASSSEITSMVPFPSTFFSNDHVYCPIDEDNLQLPSLIDDFSMDLDAFDPTLSSQSLGILGYAQENVWSPTPSMQSDMSTVLQAQPSLMIPEQDREMENQLSLPHLLEAIGESLEQGHNTLSQVILRCISHKVSPVSDPVERLAFYLSQNHETTEQGTFIKQEARKSFHDAFKAIYQGLPHGRIAHFAANSTILGSIPSDSDVIHIIDFDMGEGGQWPPLMEAIAQQHITLKLNAIRWEEEDSPDLDCVSTQWKFEDIRRNLHEHAKSCGLKLKVEEQSIEELVTELKKLNKRGGNGNGLRNFMAFNCMVGLPHMGRIRSRRHVSEFLRVAKDFIKSSPSNRGIIAFGDGEACEKLRNSTNFMSFFNGHLVHYHALLESMESNFPFQFSEARTAMENLFVAPYISSEGWFQKWEEMRQLDQNLQSETELEGRSLGEETLMEVAETMRGIKGSYEVKIEGKNGNEMVPQWKGTQLMRISVWGN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele43g1187 521 ProSiteProfiles GRAS family profile. 133 520 IPR005202 -
Lele43g1187 521 Coils Coil 312 332 - -
Lele43g1187 521 Pfam GRAS domain family 144 519 IPR005202 -
Lele43g1187 521 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 493 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele43g1187 Lele-ChrLele43 20248989 20250554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele43g1187 125 435 GRAS Transcription Factor Family AT5G66770 26.625 1.57e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele43g1187 GRAS 5.6e-34 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele43g1187 43 20248989 20250554 Lele43g1187 43 20248989 20250554 ECH
Lele41g0173 41 1386058 1387614 Lele43g1187 43 20248989 20250554 hybridization
Lele42g0176 42 1449115 1450716 Lele43g1187 43 20248989 20250554 hybridization